Sequence
atgc intronic sequence ATGC exonic sequencegtacgtgagttttatatgttctgcagtgttaacttaatgtcttatagGTTCCAAGGAAGGGAAAGATTTATTCTGTGAACGAAGGAAATGCTAAGCACTGGGACGAACCAACAAAAAAATACGTGGAGATTGCAAAGTTTCCGACGG
Basic information
species | Selaginella moellendorffii |
transcript | EFJ25223 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ25223 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: GLYMA08G19430.1 (Glycine max), 3'ss of exon 8
----------------------------------------------------gtacgtgagttttatatgttctgcagtgttaacttaatgtct-tatagGTTCCAAGGAAGGGAAAGATTTATTCTGTGAACGAAGGAAATGCTAAGCACTGGGACGAACCAACAAAAAAATACGTGGAGATTGCAAAGTTTCCGACGG
| | ||| ||| | || | | | | | | | |||| | ||||| || |||||||||||||| ||||| ||||||||||| | ||||||| |||||||| | ||
cattgcatataattttttttgtgtgcgtgccagtgtttcaaagttagactattaaagcgagctttcaaatttgtttaattactatgtgttacttgcatagATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAACTGGGATGAACCAACCACTAA-----------------------------
upper sequence: EFJ25223 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: PP1S385_43V6.1 (Physcomitrella patens), 3'ss of exon 7
-------------------------------------------------------gtacgtgagttttatatgttctgcagtgttaacttaatgtcttatagGTTCCAAGGAAGGGAAAGATTTATTCTGTGAACGAAGGAAATGCTAAGCACTGGGACGAACCAACAAAAAAATACGTGGAGATTGCAAAGTTTCCGACGG
|| | | || |||| | || | ||||| || | || |||| | ||||||||| ||||| ||||| |||||||||||||| || |||||||||| || |||| || || ||||||| |||||||| || | ||
tggtttaacgctttgtttgtatgggtttcaaatagtttttgacctgccatcttttataactatgcttctggcaatctg-ataatttatttaatttcat-cagATTCCTAAGAAGGGAAAAATTTACTCTGTTAACGAAGGAAATGCCAAACACTGGGACGGTCCTACAACCAAGTATGTGGAGAACGCAAAGTTCCCCAAGG
upper sequence: EFJ25223 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: PP1S1_300V6.2 (Physcomitrella patens), 3'ss of exon 7
-----------------------------------------gtacgtgagttttatatgttctgcag-tgttaacttaatgtcttata------------gGTTCCAAGGAAGGGAAAGATTTATTCTGTGAACGAAGGAAATGCTAAGCACTGGGACGAACCAACAAAAAAATACGTGGAGATTGCAAAGTTTCCGACGG
| ||| || || | |||| |||||| | || || || | |||| | ||||| |||||||| |||||||| ||||||||||| || |||||||||| || |||| || || ||||||| || |||||||| | ||
acacttggtttttgatgatttgttcttgtaaagtccagttggcttatgaccttc-catcatttgcaactgttaatctgatcgtttctatttgcttcgtcagATTCCCAAAAAGGGCAAGATTTACTCTGTGAATGAAGGAAATGCCAAACACTGGGACGGGCCCACAACGAAGTATGTGGAGAACGCCAAGTTTCCCAAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtacgtgagttttatatgttctgcagtgttaacttaatgtcttatagGTTCCAAGGAAGGGAAAGATTTATTCTGTGAACGAAGGAAATGCTAAGCACTGGGACGAACCAACAAAAAAATACGTGGAGATTGCAAAGTTTCCGACGG
ttttatatgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgtgagttttatatgttctgcagtgttaacttaatgtcttatagGTTCCAAGGAAGGGAAAGATTTATTCTGTGAACGAAGGAAATGCTAAGCACTGGGACGAACCAACAAAAAAATACGTGGAGATTGCAAAGTTTCCGACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG