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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggccttcggttttctttacttcatttctgtgttttagGAACACTGTAGATGGAAATCCGCAATGGTGTTGTACATACCTTCTTCAACCCATGGACCCGTTGTTTATTCAGATTGGGAAAGCATTTATCGAACAGCAA

Basic information

species Selaginella moellendorffii
transcript EFJ23779
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169115679|gb|FE517265.1|FE517265
EST:     GCATTGAAAATTCTATATCCGTCTGCCAATATCACACGTTTGCC--A---                         G---A-T-T-GATGGAAATCCGCAATGGTGTTGTACATACCTTCTTCAACC
genomic: GCATTGAAAATTCTATATCCGTCTGCCAATATCACACGTTTGCCAGATTGgtaaggcctt ... tgtgttttagGAACACTGTAGATGGAAATCCGCAATGGTGTTGTACATACCTTCTTCAACC
EST: gi|169094816|gb|FE491602.1|FE491602
EST:     GCATTGAAAATTCTATATCCGTCTGCCAATATCACACGTTTGCC--A---                         G---A-T-T-GATGGAAATCCGCAATGGTGTTGTACATACCTTCTTCAACC
genomic: GCATTGAAAATTCTATATCCGTCTGCCAATATCACACGTTTGCCAGATTGgtaaggcctt ... tgtgttttagGAACACTGTAGATGGAAATCCGCAATGGTGTTGTACATACCTTCTTCAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaggccttcggttttctttacttcatttctgtgttttagGAACACTGTAGATGGAAATCCGCAATGGTGTTGTACATACCTTCTTCAACCCATGGACCCGTTGTTTATTCAGATTGGGAAAGCATTTATCGAACAGCAA
                                        ttttctttacttcatt  CT-rich tract
                           ttttcttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaggccttcggttttctttacttcatttctgtgttttagGAACACTGTAGATGGAAATCCGCAATGGTGTTGTACATACCTTCTTCAACCCATGGACCCGTTGTTTATTCAGATTGGGAAAGCATTTATCGAACAGCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA