1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagacagtgtcttccttttctttccatttttcagacgaagacgagctgttttttctcccttttttttttccagGAGCCGCCTTCCTTACGACCAGTTCCGTGCGTTGCTAAACACTATCAAAGAGCTCAATTCCCACCTGCGGACGCGAGAG
species | Selaginella moellendorffii |
transcript | EFJ23755 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCCCCTCGATGATGAAAGCCGATGGAAAGGAGTTTTTTCGGCAAGCAAA GAGCCGCCTTCCTTACGACCAGTTCCGTGCGTTGCTAAACACTATCAAAGAEST: gi|169052965|gb|FE460680.1|FE460680
genomic: CCCCCTCGATGATGAAAGCCGATGGAAAGGAGTTTTTTCGGCAAGCAAAgtaagacagt ... ttttttccagGAGCCGCCTTCCTTACGACCAGTTCCGTGCGTTGCTAAACACTATCAAAGA
EST: CCCCCTNGATGATGAAAGCCGATGGAAAGGAGTTTTTTCGGCAAGCAAA GAGCCGCCTTCCTTACGACCAGTTCCGTGCGTTGCTAAACACTATCAAAGAEST: gi|169036630|gb|FE446554.1|FE446554
genomic: CCCCCTCGATGATGAAAGCCGATGGAAAGGAGTTTTTTCGGCAAGCAAAgtaagacagt ... ttttttccagGAGCCGCCTTCCTTACGACCAGTTCCGTGCGTTGCTAAACACTATCAAAGA
EST: CCCCCTCGATGATGAAAGCCGATGGAAAGGAGTTTTTTCGGCAAGCAAA GAGCCGCCTTCCTTACGACCAGTTCCGTGCGTTGCTAAACACTATCAAAGAEST: gi|169048891|gb|FE456034.1|FE456034
genomic: CCCCCTCGATGATGAAAGCCGATGGAAAGGAGTTTTTTCGGCAAGCAAAgtaagacagt ... ttttttccagGAGCCGCCTTCCTTACGACCAGTTCCGTGCGTTGCTAAACACTATCAAAGA
EST: CCCCCTCGATGATGAAAGCCGATGGAAAGGAGTTTTTTCGGCAAGCAAA GAGCCGCCTTCCTTACGACCAGTTCCGTGCGTTGCTAAACACTATCAAAGAEST: gi|169103281|gb|FE507310.1|FE507310
genomic: CCCCCTCGATGATGAAAGCCGATGGAAAGGAGTTTTTTCGGCAAGCAAAgtaagacagt ... ttttttccagGAGCCGCCTTCCTTACGACCAGTTCCGTGCGTTGCTAAACACTATCAAAGA
EST: CCCCCTCGATGATGAAAGCCGATGGAAAGGAGTTTTTTCGGCAAGCAAA GAGCCGCCTTCCTTACGACCAGTTCCGTGCGTTGCTAAACACTATCAAAGAEST: gi|169110117|gb|FE513358.1|FE513358
genomic: CCCCCTCGATGATGAAAGCCGATGGAAAGGAGTTTTTTCGGCAAGCAAAgtaagacagt ... ttttttccagGAGCCGCCTTCCTTACGACCAGTTCCGTGCGTTGCTAAACACTATCAAAGA
EST: CCCCCTCGATGATGAAAGCCGATGGAAAGGAGTTTTTTCGGCAAGCAAA GAGCCGCCTTCCTTACGACCAGTTCCGTGCGTTGCTAAACACTATCAAAGAEST: gi|169110116|gb|FE513357.1|FE513357
genomic: CCCCCTCGATGATGAAAGCCGATGGAAAGGAGTTTTTTCGGCAAGCAAAgtaagacagt ... ttttttccagGAGCCGCCTTCCTTACGACCAGTTCCGTGCGTTGCTAAACACTATCAAAGA
EST: CCCCCTCGATGATGAAAGCCGATGGAAAGGAGTTTTTTCGGCAAGCAAA GAGCCGCCTTCCTTACGACCAGTTCCGTGCGTTGCTAAACACTATCAAAGA
genomic: CCCCCTCGATGATGAAAGCCGATGGAAAGGAGTTTTTTCGGCAAGCAAAgtaagacagt ... ttttttccagGAGCCGCCTTCCTTACGACCAGTTCCGTGCGTTGCTAAACACTATCAAAGA
tctttccatttttcagacgaagacgagctgttttttctcccttttttttttccagGAGCCGCCTTCCTTACGACCAGTTCCGTGCGTTGCTAAACACTATCAAAGAGCTCAATTCCCACCTGCGGACGCGAGAG
cgagctgttttttctc CT-rich tract
tttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacagtgtcttccttttctttccatttttcagacgaagacgagctgttttttctcccttttttttttccagGAGCCGCCTTCCTTACGACCAGTTCCGTGCGTTGCTAAACACTATCAAAGAGCTCAATTCCCACCTGCGGACGCGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA