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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggtggattttcatgttacggcttctgtactcatggctgtctcttctttcagTGCTTTTCATCTCAGCTATAATATGATATTAAATCAGATGCGCTGTGAAGAGAGTAACCCAGAAGACTTACTTCGCCAGTCCTTTCACCAATTTCAGTCT

Basic information

species Selaginella moellendorffii
transcript EFJ23732
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169049230|gb|FE459506.1|FE459506
EST:     CCAGCTGTTGCAAAGCAGATAGTGAAGGGCACTGCCGATCCATTGAATAG                         TGCTTTTCATCTCAGCTATAATATGATATTAAATCAGATGCGCTGTGAAGA
genomic: CCAGCTGTTGCGAAGCAGATAGTGAAGGGCACTGCCGATCCACTGAATAGgtaatggtgg ... cttctttcagTGCTTTTCATCTCAGCTATAATATGATATTAAATCAGATGCGCTGTGAAGA
EST: gi|169097393|gb|FE497159.1|FE497159
EST:     CCAGCTGTTGCAAAGCAGATAGTGAAGGGCACTGCCGATCCATTGAATAG                         TGCTTTTCATCTCAGCTATAATATGATATTAAATCAGATGCGCTGTGAAGA
genomic: CCAGCTGTTGCGAAGCAGATAGTGAAGGGCACTGCCGATCCACTGAATAGgtaatggtgg ... cttctttcagTGCTTTTCATCTCAGCTATAATATGATATTAAATCAGATGCGCTGTGAAGA
EST: gi|169077130|gb|FE484509.1|FE484509
EST:     CCAGCTGTTGCGAAGCAGATAGTGAAGGGCACTGCCGATCCACTGAATAG                         TGCTTTTCATCTCAGCTATAATATGATATTAAATCAGATGCGCTGTGAAGA
genomic: CCAGCTGTTGCGAAGCAGATAGTGAAGGGCACTGCCGATCCACTGAATAGgtaatggtgg ... cttctttcagTGCTTTTCATCTCAGCTATAATATGATATTAAATCAGATGCGCTGTGAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatggtggattttcatgttacggcttctgtactcatggctgtctcttctttcagTGCTTTTCATCTCAGCTATAATATGATATTAAATCAGATGCGCTGTGAAGAGAGTAACCCAGAAGACTTACTTCGCCAGTCCTTTCACCAATTTCAGTCT
                                       ctgtctcttctttc  CT-rich tract
         attttcat  TA-rich tract