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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttttttctcgtttccacttagcttggacgatgactaatgctcggtgttttagACTACTTTTCTTGCACGATGGTAAAATCGTATGGGAAGGGGAGACTTCCAAGTTCGGTAATACTTCCAATCCTATAGTTCGTCAG

Basic information

species Selaginella moellendorffii
transcript EFJ22908
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169031453|gb|FE437163.1|FE437163
EST:     TACGTTGTTGTGACACATCAGCATAGCACGATACGACGCGCTGTGGACAG                         ACTACTTTTCTTGCACGATGGTAAAATCGTATGGGAAGGGGAGACTTCCAA
genomic: TACGTTGTTGTGACACATCAGCATAGCACGATACGACGCGCTGTGGACAGgtgatttttt ... ggtgttttagACTACTTTTCTTGCACGATGGTAAAATCGTATGGGAAGGGGAGACTTCCAA
EST: gi|169033507|gb|FE442059.1|FE442059
EST:     TACGTTGTTGTGACTCATCAGCATAGCACGATACGACGCGCTGTGGACAG                         ACTACTTTTCTTGCACGATGGTAAAATCGTATGGGAAGGGGAGACTTCCAA
genomic: TACGTTGTTGTGACACATCAGCATAGCACGATACGACGCGCTGTGGACAGgtgatttttt ... ggtgttttagACTACTTTTCTTGCACGATGGTAAAATCGTATGGGAAGGGGAGACTTCCAA
EST: gi|169068693|gb|FE479751.1|FE479751
EST:     TACGTTGTTGTGACACATCAGCATAGCACGATACGACGCGCTGTGGACAG                         ACTACTTTTCTTGCACGATGGTAAAATCGTATGGGAAGGGGAGACTTCCAA
genomic: TACGTTGTTGTGACACATCAGCATAGCACGATACGACGCGCTGTGGACAGgtgatttttt ... ggtgttttagACTACTTTTCTTGCACGATGGTAAAATCGTATGGGAAGGGGAGACTTCCAA
EST: gi|169100790|gb|FE503225.1|FE503225
EST:     TACGTTGTTGTGACACATCAGCATAGCACGATACGACGCGCTGTGGACAG                         ACTACTTTTCTTGCACGATGGTAAAATCGTATGGGAAGGGGAGACTTCCAA
genomic: TACGTTGTTGTGACACATCAGCATAGCACGATACGACGCGCTGTGGACAGgtgatttttt ... ggtgttttagACTACTTTTCTTGCACGATGGTAAAATCGTATGGGAAGGGGAGACTTCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttttttctcgtttccacttagcttggacgatgactaatgctcggtgttttagACTACTTTTCTTGCACGATGGTAAAATCGTATGGGAAGGGGAGACTTCCAAGTTCGGTAATACTTCCAATCCTATAGTTCGTCAG
                                  gactaat  putative branch site (score: 2)
                                               tgtttta  TA-rich tract