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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tgcgtacttgtgctttacttcacaagagtatctgagactttaattttcactttgtctgcaggTGGGACATTATTGCGGAGAAGTTTGGCTTCATGCTAATTTTTGGTGACATGGTTTGGATTCCCTTTACGTTTAGCATCCAG

Basic information

species Selaginella moellendorffii
transcript EFJ22157
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169067261|gb|FE473872.1|FE473872
EST:     ATCTACGTGCTGGATTTTTTGTGGTACGAAGAATACATGACCTCAACG                         TGGGACATTATTGCGGAGAAGTTTGGCTTCATGCTAATTTTTGGTGACATG
genomic: ATCTACGTGCTGGATTTTTTGTGGTACGAAGAATACATGACCTCAACGtgcgtacttg ... tgtctgcaggTGGGACATTATTGCGGAGAAGTTTGGCTTCATGCTAATTTTTGGTGACATG
EST: gi|169067260|gb|FE473871.1|FE473871
EST:     ATCTACGTGCTGGATTTTTTGTGGTACGAAGAATACATGACCTCAACG                         TGGGACATTATTGCGGAGAAGTTTGGCTTCATGCTAATTTTTGGTGACATG
genomic: ATCTACGTGCTGGATTTTTTGTGGTACGAAGAATACATGACCTCAACGtgcgtacttg ... tgtctgcaggTGGGACATTATTGCGGAGAAGTTTGGCTTCATGCTAATTTTTGGTGACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgctttacttcacaagagtatctgagactttaattttcactttgtctgcaggTGGGACATTATTGCGGAGAAGTTTGGCTTCATGCTAATTTTTGGTGACATGGTTTGGATTCCCTTTACGTTTAGCATCCAG
                              ctttaat  putative branch site (score: 4)
                                    ttttcactttgtct  CT-rich tract
                               tttaattttcacttt  TA-rich tract