1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtactgttttcgactatcatggtgaatttggtttctagaatatgaccttgcgtttgcttcgatcaccagAAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGACAGTCTACAAGAAAGCTCCATCGTTTCTCTCAATACATATGGGAGTGAAAGC
species | Selaginella moellendorffii |
transcript | EFJ21638 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AATGCTACGCGATGGGATACTTTTG AAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGACAGEST: gi|169103946|gb|FE508404.1|FE508404
genomic: AATGCTACGCGATGGGATACTTTTGgtactgtttt ... cgatcaccagAAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGACAG
EST: ACGCGATGGGATACTTTTG AAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGACAGEST: gi|169045741|gb|FE453053.1|FE453053
genomic: ACGCGATGGGATACTTTTGgtactgtttt ... cgatcaccagAAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGACAG
EST: ACGCGATGGGATACTTTTG AAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGACAGEST: gi|169027210|gb|FE435081.1|FE435081
genomic: ACGCGATGGGATACTTTTGgtactgtttt ... cgatcaccagAAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGACAG
EST: ATTGCTTGGCAAAACAGTCATCTCCAATGCTACGCGATGGGATAC-TTTG AAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGACAGEST: gi|169096608|gb|FE499520.1|FE499520
genomic: ATTGCTTGGCAAAACAGTCATCTCCAATGCTACGCGATGGGATACTTTTGgtactgtttt ... cgatcaccagAAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGACAG
EST: ATTACTT-GCAAAACAGTTATCTCCAATGCTACGCGATGGGATACTTTTG AAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGAAAGEST: gi|169040805|gb|FE447856.1|FE447856
genomic: ATTGCTTGGCAAAACAGTCATCTCCAATGCTACGCGATGGGATACTTTTGgtactgtttt ... cgatcaccagAAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGACAG
EST: ATTGCTTGGCAAAACAGTCATCTCCAATGCTACGCGATGGGATACTTTTG AAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGACAGEST: gi|169048503|gb|FE455737.1|FE455737
genomic: ATTGCTTGGCAAAACAGTCATCTCCAATGCTACGCGATGGGATACTTTTGgtactgtttt ... cgatcaccagAAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGACAG
EST: ATTACTTGGCAAAACAGTTATCTCCAATGCTACGCGATGGGATACTTTTG AAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGAAAGEST: gi|169048502|gb|FE455736.1|FE455736
genomic: ATTGCTTGGCAAAACAGTCATCTCCAATGCTACGCGATGGGATACTTTTGgtactgtttt ... cgatcaccagAAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGACAG
EST: ACGCGATGGGATACTTTTG AAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGAAAG
genomic: ACGCGATGGGATACTTTTGgtactgtttt ... cgatcaccagAAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGACAG
tatcatggtgaatttggtttctagaatatgaccttgcgtttgcttcgatcaccagAAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGACAGTCTACAAGAAAGCTCCATCGTTTCTCTCAATACATATGGGAGTGAAAGC
tttgcttc CT-rich tract
tagaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgttttcgactatcatggtgaatttggtttctagaatatgaccttgcgtttgcttcgatcaccagAAAAGCTGCTCGATTCTGAAATGCCAGACGAAGAACGACGCTTCCAGACAGTCTACAAGAAAGCTCCATCGTTTCTCTCAATACATATGGGAGTGAAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA