1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtcattcacatctaatccgtaagctctctggttgatgatcgttatttctgtagAGCCGGTGGAGGCCTGGCCTGAGAAAGAGCATGAAACGGAAGCAGAACCCCTTAACGTCTAACATACTCGACTTGGCAAGGAAACGTAAGAGCTTGATTT
species | Selaginella moellendorffii |
transcript | EFJ21113 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCTTCAGAACAGGCTGATGGTTGTGTCCGAGAAGGACAAGGCGAAAACCA AGCCGGTGGAGGCCTGGCCTGAGAAAGAGCATGAAACGGAAGCAGAACCCCEST: gi|169055079|gb|FE461941.1|FE461941
genomic: TCTTCAGAACAGGCTGATGGTTGTGTCCGAGAAGGACAAGGCGAAAACCAgtaagtcatt ... atttctgtagAGCCGGTGGAGGCCTGGCCTGAGAAAGAGCATGAAACGGAAGCAGAACCCC
EST: TCTTCAGAACAGGCTGATGGTTGTGTCCGAGAAGGACAAGGCGAAAACCA AGCCGGTGGAGGCCTGGCCTGAGAAAGAGCATGAAACGGAAGCAGAACCCC
genomic: TCTTCAGAACAGGCTGATGGTTGTGTCCGAGAAGGACAAGGCGAAAACCAgtaagtcatt ... atttctgtagAGCCGGTGGAGGCCTGGCCTGAGAAAGAGCATGAAACGGAAGCAGAACCCC
aagtcattcacatctaatccgtaagctctctggttgatgatcgttatttctgtagAGCCGGTGGAGGCCTGGCCTGAGAAAGAGCATGAAACGGAAGCAGAACCCCTTAACGTCTAACATACTCGACTTGGCAAGGAAACGTAAGAGCTTGATTT
ttatttct CT-rich tract
ttatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcattcacatctaatccgtaagctctctggttgatgatcgttatttctgtagAGCCGGTGGAGGCCTGGCCTGAGAAAGAGCATGAAACGGAAGCAGAACCCCTTAACGTCTAACATACTCGACTTGGCAAGGAAACGTAAGAGCTTGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT