1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcgaggagagaaagcttttgttttcctttgatggatcgatttccaagtgcttgaagatgtgagaattgtcacagctaattctaatggcttgttcttccagGTCCGATACCAAAGTAGAAAGAGGCTGGCCGAGCAGCGTCCGCGA
species | Selaginella moellendorffii |
transcript | EFJ19270 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
agtgcttgaagatgtgagaattgtcacagctaattctaatggcttgttcttccagGTCCGATACCAAAGTAGAAAGAGGCTGGCCGAGCAGCGTCCGCGA
ttctaat putative branch site (score: 13)
cttgttcttcc putative PPT
taattctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgaggagagaaagcttttgttttcctttgatggatcgatttccaagtgcttgaagatgtgagaattgtcacagctaattctaatggcttgttcttccagGTCCGATACCAAAGTAGAAAGAGGCTGGCCGAGCAGCGTCCGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - agagaaag
- - - - - - - -ttttgtt
- - - - - - - - - - - ttccttt
- - - - - - - - - - - - - - - - - - - - - - - gtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacagct