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gtacgttgttagtggcttgatatgttttgttagcttagtaatgtggtgtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGAC
species | Selaginella moellendorffii |
transcript | EFJ18540 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG TTTCACATATTGTTTTGCAEST: gi|169107453|gb|FE509141.1|FE509141
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCA
EST: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG TT-CACATATTGTTTTGCATCTTCTGCGCCGTCGCTEST: gi|169107452|gb|FE509140.1|FE509140
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCT
EST: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG TTTCACATATTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCEST: gi|169105291|gb|FE507628.1|FE507628
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
EST: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG TTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCEST: gi|169102152|gb|FE505778.1|FE505778
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
EST: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG TTTCACATATTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCEST: gi|169105683|gb|FE508449.1|FE508449
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
EST: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG TTTCACATATTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCEST: gi|169049667|gb|FE457759.1|FE457759
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
EST: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG TTTCACATATTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCEST: gi|169049666|gb|FE457758.1|FE457758
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
EST: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG TTTCACATATTGTTTTGCATTTTTTGCGCCGTCGCTCCTCCCATTGTGTTCEST: gi|169102153|gb|FE505779.1|FE505779
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
EST: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG TTTCACATATTGTTTTGCATCTTCTGCGCCGTCGCTCCEST: gi|169051997|gb|FE460336.1|FE460336
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCC
EST: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTG TTTCACATATTGTTTTGCATCTTTTGCGCCGTCGCTCCTCCCATTGTGTTC
genomic: GTCAGAGAGTGCTCTTAAGTTCGGATGGTTCTTCATCGCGTATTTGgtacgttgtt ... gtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTC
acgttgttagtggcttgatatgttttgttagcttagtaatgtggtgtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGAC
gcttgat putative branch site (score: 12)
atatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttgttagtggcttgatatgttttgttagcttagtaatgtggtgtgcgtgcagTTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA