Sequence
atgc intronic sequence ATGC exonic sequencegtaagatcatctatgtgtattctgttgtttacatgatctatgctttcagATTATCAAATCGATTGCTCCATCGATTTACGGTCATGAGAACATAAAGACTGCTATAGCTCTTGCCATGTTTGGGGGGCAGGAGAAAAACGTACAAGGCA
Basic information
species | Selaginella moellendorffii |
transcript | EFJ17122 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ17122 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: LOC_Os11g29380.1 (Oryza sativa), 3'ss of exon 9
---------------------------------gtaagatcatctatgtgtattctgttgtttacatgatctat-gctttcagATTATCAAATCGATTGCTCCATCGATTTACGGTCATGAGAACATAAAGACTGCTATAGCTCTTGCCATGTTTGGGGGGCAGGAGAAAAACGTACAAGGCA
|| || | ||| | | ||| | |||| ||| | || |||||| ||||||| ||||| ||||| || || |||||||| | || |||||||| || || || || |||||||||||||| ||||| || || | || |
gtttgtgcttaatccttaagccccttgactcaattataataagcta-atcagtattgtctgacaaatgacttattgtttacagATTGTCAAATCAATTGCACCATCCATATATGGTCATGAAGATATCAAGACTGCCATTGCACTAGCTATGTTTGGGGGGCAAGAGAAGAATGTCAAGGGAA
upper sequence: EFJ17122 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: GRMZM2G139894_T01 (Zea mays), 3'ss of exon 9
----------------------------gtaagatcat-ctatgtgtat-tctgttgtttacatgatctatgctttcagATTATCAAATCGATTGCTCCATCGATTTACGGTCATGAGAACATAAAGACTGCTATAGCTCTTGCCATGTTTGGGGGGCAGGAGAAAAACGTACAAGGCA
| | | | || | || | | | | | | ||| |||||||||||||| ||||| ||||| |||||||| ||||| | || |||||||| || || ||||| |||||||| || || ||||| || || | || |
gtttgttactcaactctttaatctcttgatgaaaatgtgttaagctaatatacgctaacttaagcacctaactcaacagATTATCAAATCAATTGCACCATCCATTTACGGGCATGAAGATATCAAGACTGCCATTGCACTTGCTATGTTTGGTGGACAAGAGAAGAATGTGAAGGGAA
upper sequence: EFJ17122 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: GLYMA17G03920.1 (Glycine max), 3'ss of exon 8
------------------------------------gtaagatcatctatgtgtattctgttgtttacatgatctatgctttcagATTATCAAATCGATTGCTCCATCGATTTACGGTCATGAGAACATAAAGACTGCTATAGCTCTTGCCATGTTTGGGGGGCAGGAGAAAAACGTACAAGGCA
| ||| || | |||| | | ||| ||| || ||||||||| | || || ||||||||||| || || |||||||| ||||||| ||||| |||||| | || |||||||| || || || |||||||| |||| |
gtgtgttccttggaatttttattggtatttctttcaatttgattattgttctgtaatgtaatgtgc-tatggattaaa-tttcagATTGTTAAGTCTATTGCTCCATCAATCTATGGTCATGATGACATAAAAACTGCAATAGCTTTAGCTATGTTTGGAGGTCAAGAAAAAAACGTGGAAGGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtaagatcatctatgtgtattctgttgtttacatgatctatgctttcagATTATCAAATCGATTGCTCCATCGATTTACGGTCATGAGAACATAAAGACTGCTATAGCTCTTGCCATGTTTGGGGGGCAGGAGAAAAACGTACAAGGCA
tgctttc CT-rich tract
ttgttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagatcatctatgtgtattctgttgtttacatgatctatgctttcagATTATCAAATCGATTGCTCCATCGATTTACGGTCATGAGAACATAAAGACTGCTATAGCTCTTGCCATGTTTGGGGGGCAGGAGAAAAACGTACAAGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA