1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcgagttttcagaaggggttgtgcgaaccacatctaaccagaggcttcaacagAATAAGTGTAACGTCGGATACGCATTTATCAATATGCTGTCGCCTTCCTTGATCGTGTCCTTCTACCAG
species | Selaginella moellendorffii |
transcript | EFJ16044 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGCAGCACCGTGGAACGTATGATTTCATATACTTGCCTATTGATTTTAAG AATAAGTGTAACGTCGGATACGCATTCATCAATATGCTGTCGCCTTCCTTGEST: gi|169060883|gb|FE469278.1|FE469278
genomic: AGCAGCACCGTGGAACGTATGATTTCATATACTTGCCCATTGATTTTAAGgtaagcgagt ... gcttcaacagAATAAGTGTAACGTCGGATACGCATTTATCAATATGCTGTCGCCTTCCTTG
EST: AGCAGCACCGTGGAACGTATGATTTCATATACTTGCCCATTGATTTTAAG AATAAGTGTAACGTCGGATACGCATTTATCAATATGCTGTCGCCTTCCTTGEST: gi|169051393|gb|FE457678.1|FE457678
genomic: AGCAGCACCGTGGAACGTATGATTTCATATACTTGCCCATTGATTTTAAGgtaagcgagt ... gcttcaacagAATAAGTGTAACGTCGGATACGCATTTATCAATATGCTGTCGCCTTCCTTG
EST: AGCAGCACCGTGGAACGTATGATTTCATATACTTGCCTATTGATTTTAAG AATAAGTGTAACGTCGGATACGCATTCATCAATATGCTGTCGCCTTCCTTG
genomic: AGCAGCACCGTGGAACGTATGATTTCATATACTTGCCCATTGATTTTAAGgtaagcgagt ... gcttcaacagAATAAGTGTAACGTCGGATACGCATTTATCAATATGCTGTCGCCTTCCTTG
aagcgagttttcagaaggggttgtgcgaaccacatctaaccagaggcttcaacagAATAAGTGTAACGTCGGATACGCATTTATCAATATGCTGTCGCCTTCCTTGATCGTGTCCTTCTACCAG
atctaac putative branch site (score: 21)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgagttttcagaaggggttgtgcgaaccacatctaaccagaggcttcaacagAATAAGTGTAACGTCGGATACGCATTTATCAATATGCTGTCGCCTTCCTTGATCGTGTCCTTCTACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG