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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctcttttaatggaccatgtccaaagtcactaaatgttttcgttttctcagGCTGTCGGCAAGGTTCTTCCAGAGCTCAATGGCAAGCTCACAGGAATGGCGTTCCGTGTCCCAACTCCAAACGTCTCAGTCGTCGACTTGACGTGCCGAT

Basic information

species Selaginella moellendorffii
transcript EFJ15779
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ15779 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: LOC_Os02g07490.1 (Oryza sativa), 3'ss of exon 10
----------------gtctcttttaatggacca--tgtccaaagtcactaaatgttttcgtt--ttctcagGCTGTCGGCAAGGTTCTTCCAGAGCTCAATGGCAAGCTCACAGGAATGGCGTTCCGTGTCCCAACTCCAAACGTCTCAGTCGTCGACTTGACGTGCCGAT
                 |||   ||  |   | |  | ||     |  || | ||||||  ||  || | ||||||| || || || || || ||||| ||||| |||||||| || ||||| ||||| || ||||| ||||| || || || ||||||||||| |||||  
gtacgatgaaccaaaaatctaccttgcttttctagatttctgttttggctgactgttttgattccttattagGCTGTTGGGAAAGTCCTCCCTGAGCTAAATGGAAAGCTCACTGGTATGGCCTTCCGAGTTCCAACACCAAATGTGTCTGTTGTCGACTTGACCTGCCGGA

upper sequence: EFJ15779 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: GLYMA16G09020.1 (Glycine max), 3'ss of exon 10
-------------------------------gtctcttttaatggaccatgtccaaagtcactaaatgttttcgttttctcagGCTGTCGGCAAGGTTCTTCCAGAGCTCAATGGCAAGCTCACAGGAATGGCGTTCCGTGTCCCAACTCCAAACGTCTCAGTCGTCGACTTGACGTGCCGAT
                                ||| |||| |       | |      | |       |||  |   || |||||||| || || |||||||||||||| ||||| || ||||| || ||||| |||||||| || ||||| || || || || || |||||||| |||||  
gtacaagatggatggacacagattttatgctttctattttcagtactggtatttgtgattaggtttgttttatgaaatcacagGCTGTTGGGAAAGTTCTTCCAGAGCTAAATGGAAAACTCACTGGGATGGCATTCCGTGTTCCGACTCCCAATGTTTCTGTGGTGGACTTGACTTGCCGGC

upper sequence: EFJ15779 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: AT1G16300.1 (Arabidopsis thaliana), 3'ss of exon 10
----------------------------gtctcttttaatggaccatgtccaaagtcactaaatgttt--tcgttttctcagGCTGTCGGCAAGGTTCTTCCAGAGCTCAATGGCAAGCTCACAGGAATGGCGTTCCGTGTCCCAACTCCAAACGTCTCAGTCGTCGACTTGACGTGCCGAT
                               |    |   | | ||| |  || | ||  |  | |||  | || |    ||||||| || ||||| ||||| || |||||||| || || ||||||||||| |||||||||||||| ||||| ||||| || || || || || || ||| 
gtacccaaatttgtacagttatatataaacatagcatctggaatcatatttaa-gccatgacttttttacttgtctcaatagGCTGTTGGTAAGGTCCTTCCGGAACTCAATGGAAAACTAACAGGAATGGCCTTCCGTGTCCCAACACCAAATGTCTCTGTTGTGGATTTAACTTGTCGAC

upper sequence: EFJ15779 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: PP1S309_84V6.1 (Physcomitrella patens), 3'ss of exon 8
-----------------------------------------------------------------------gtctcttttaatggaccat--gtccaaa-gtcactaaatgttttcg---ttttc--tcagGCTGTCGGCAAGGTTCTTCCAGAGCTCAATGGCAAGCTCACAGGAATGGCGTTCCGTGTCCCAACTCCAAACGTCTCAGTCGTCGACTTGACGTGCCGAT
                                                                       ||||    | ||  | |||  | |  |  ||| ||       ||||   |||||   ||||| || |||||||| || |||||||| ||||| |||||||| || ||||| ||||||||||| ||||| || || || || || ||  ||||    ||  
gtactgtgcacgacagttgaatccttggcgagtgcactcatgaggctgctgtaagttatgtgagcggaattgtctgcactgattcaacattggcctgatcgtcgctttcctcgttcgggattttcaaacagGCCGTGGGCAAGGTGCTGCCAGAGCTGAATGGGAAGCTCACCGGTATGGCTTTCCGTGTCCCGACTCCCAATGTGTCTGTGGTGGATCTGACTGTGCGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctcttttaatggaccatgtccaaagtcactaaatgttttcgttttctcagGCTGTCGGCAAGGTTCTTCCAGAGCTCAATGGCAAGCTCACAGGAATGGCGTTCCGTGTCCCAACTCCAAACGTCTCAGTCGTCGACTTGACGTGCCGAT
                               cactaaa  putative branch site (score: 2)
                                      tgttttcgttttctc  CT-rich tract
                                  taaatgtttt  TA-rich tract