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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgctatagtttcgttttgccatcgtcagaattgacactccttccagGATCCTTGGTGGAATCCTGCCGTGGAAGAACAAGCCATAATGAGAATCCACCGTATCGGCCAGACTCAAAACGTATCGATTAAGCGATTCATCGTCAAA

Basic information

species Selaginella moellendorffii
transcript EFJ15495
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ15495 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: LOC_Os02g32570.2 (Oryza sativa), 3'ss of exon 11
--------------------------------------------gttcgctatagtttcgttttgccatcgtcagaat-------tgacactccttccagGATCCTTGGTGGAATCCTGCCGTGGAAGAACAAGCCATAATGAGAATCCACCGTATCGGCCAGACTCAAAACGTATCGATTAAGCGATTCATCGTCAAA
                                               ||   |||  |  | ||  |||| |  |  |       | |   | | | ||||||||||||||||||||||| || ||||||||||| || ||| | ||||| || || || || ||  | |  || || || ||  ||||||||||||| 
aaaacattatacatttcttgtgctatagtgatctactaattttttgccgtgttagcatattcttagcatcatttgtgtatcgtaatcatgtttccttcagGATCCTTGGTGGAATCCTGCTGTTGAAGAACAAGCTATCATGCGGATCCATCGAATTGGTCAAACAAAGAGTGTTTCCATCAAAAGATTCATCGTCAAG

upper sequence: EFJ15495 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: GRMZM2G057504_T01 (Zea mays), 3'ss of exon 7
-------------------------------------------------gttcgctatagtttcgtt--ttgccatcgtcagaattgacactccttccagGATCCTTGGTGGAATCCTGCCGTGGAAGAACAAGCCATAATGAGAATCCACCGTATCGGCCAGACTCAAAACGTATCGATTAAGCGATTCATCGTCAAA
                                                  || |||    |    ||  |||  |  |||  |   ||   |      |||| ||||||||||||||||| ||||||||||||||  | ||| | ||||| || || || || ||  | |  || || || |   |||||||||| || 
acagtaatatagtgtactgttagcttcttttttatgctagccattatcttttagctgccttccacttgtttgtgagtgtcttatgagatgtttgccgaagGACCCTTGGTGGAATCCTGCTGTGGAAGAACAAGCTGTCATGCGCATCCATCGAATTGGTCAAACGAAGACTGTTTCTATCAGAAGATTCATCGTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169070789|gb|FE478883.1|FE478883
EST:     CAGGAGGCGTGGGACTCAACCTGACGGCCGCATCTAACGCTTTTCTCATG                         GATCCTTGGTGGAATCCTGCCGTGGAAGAACAAGCCATAATGAGAATCCAC
genomic: CAGGAGGCGTGGGACTCAACCTGACGGCCGCATCTAACGCTTTTCTCATGgttcgctata ... ctccttccagGATCCTTGGTGGAATCCTGCCGTGGAAGAACAAGCCATAATGAGAATCCAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcgctatagtttcgttttgccatcgtcagaattgacactccttccagGATCCTTGGTGGAATCCTGCCGTGGAAGAACAAGCCATAATGAGAATCCACCGTATCGGCCAGACTCAAAACGTATCGATTAAGCGATTCATCGTCAAA
                                     aattgac  putative branch site (score: 3)
                                           cactccttcc  CT-rich tract
            tatagttt  TA-rich tract