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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaatctgtggcttctttctggtctcaattttctaaattacgctttttgcagGCATTTCAACATGAACCGCATCAGACTCGTTTGGTCGCGAATCTGGAACGTTCTCTCCGACTACTTCGTCACGGTTGGGTGTTCTGACAACTTGTCCATT

Basic information

species Selaginella moellendorffii
transcript EFJ15473
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ15473 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: GRMZM2G058870_T01 (Zea mays), 3'ss of exon 7
---------------------------------------gtaagtaatctgtggcttctttctggtctcaa---------------ttttctaaattacgctttttgcagGCATTTCAACATGAACCGCATCAGACTCGTTTGGTCGCGAATCTGGAACGTTCTCTCCGACTACTTCGTCACGGTTGGGTGTTCTGACAACTTGTCCATT
                                        |  ||  | |     |||| |  ||||| |                |||| |   ||   | | ||| ||||||| ||| ||||||||||||||||| ||||||||  | || ||| | ||  | || || |  || |||||  |||| || || || ||  | || || 
gtaaggaatctgaggctttattatcattactacattgcaatgtgtttttttacatttctgttcggtcttatagacagtgcatgattttttttttttttgccctcttgtagGCATTACAATATGAACCGCATCAGACTTGTTTGGTCAAGTATATGGCATGTCTTGTCTGATTTTTTTGTCACCATTGGCTGCTCAGAAAATCTTTCAATC

upper sequence: EFJ15473 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 7
------------------------------------------gtaagtaatctgtggcttctttctggtct--caattttctaaattacgctttttgcagGCATTTCAACATGAACCGCATCAGACTCGTTTGGTCGCGAATCTGGAACGTTCTCTCCGACTACTTCGTCACGGTTGGGTGTTCTGACAACTTGTCCATT
                                           |  ||  | |   | | |  | |  | |    ||||| ||  ||  | || || |||||||| ||| ||||||||||||||||| || ||||| || || ||||| ||||| || || | ||| ||  | ||||| |  || || ||| | ||  ||
aaggttgtaaaaatgtcattttgaacagataagagatatgggatgcgttttataatgatgccatgttatttatttattttttattttttgtttgtttcagGCATTACAATATGAACCGCATCAGACTTGTATGGTCTCGCATATGGAATGTTCTATCTGATTTCTTTGTATCAGTTGGCTTGTCAGAAAACCTCTCAGTT

upper sequence: EFJ15473 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: PP1S11_55V6.1 (Physcomitrella patens), 3'ss of exon 8
---------------------------------gtaagtaatctgtggcttctttctg----------gtctcaattttctaaattacgctt-tttgcagGCATTTCAACATGAACCGCATCAGACTCGTTTGGTCGCGAATCTGGAACGTTCTCTCCGACTACTTCGTCACGGTTGGGTGTTCTGACAACTTGTCCATT
                                   || | |||  |||||||   ||           |  | || ||  | ||      |  | |||||||||||||||||||  |||||||| || ||||||||    || ||||  ||  |  | || ||||| || || || |||||||| || ||  | ||  ||
tactttgtcgggataattgtattgtggcaatgatcaattgatcaatggcttcaacctatacaaggactgcataaagttatttaacactattcatatgcagGCATTTCAACATGACGCGCATCAGGCTGGTTTGGTCAAAGATGTGGAGTGTATTGGCTGATTACTTTGTAACAGTCGGGTGTTCAGATAATCTTTCTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagtaatctgtggcttctttctggtctcaattttctaaattacgctttttgcagGCATTTCAACATGAACCGCATCAGACTCGTTTGGTCGCGAATCTGGAACGTTCTCTCCGACTACTTCGTCACGGTTGGGTGTTCTGACAACTTGTCCATT
                                 ttctaaa  putative branch site (score: 2)
                                           cgcttttt  putative PPT
                           tcaattttctaaatta  TA-rich tract