1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttgctttaatatcaactttttaacgtctacacgggcttttctatttcgcagGCACTGGCACGGGAGATACGAGAGTACATAGCAAAGCGGTATCAGGAAAACCAAACCAAAATGTTCTACGAGATTGTGGTGGCACCGAAGTACACCGAGA
species | Selaginella moellendorffii |
transcript | EFJ15309 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCATCAGTGCATTCGGCGGTATAGTAGCCTTCAATTGCGAAGTTGACGAG GCACTGGCACGAGAGATACGAGAGTACATAGCAAAGCGGTATCAGGAAAACEST: gi|169042566|gb|FE453712.1|FE453712
genomic: CCGTCAGTGCATTCGGCGGTATAGTAGCCTTCAATTGCGAAGTTGACGAGgtttgcttta ... tatttcgcagGCACTGGCACGGGAGATACGAGAGTACATAGCAAAGCGGTATCAGGAAAAC
EST: CGGTATAGTAGCCTTCAATTGCGAAGTTGACGAG GCACTGGCACGAGAGATACGAGAGTACATAGCANAGCGGTATCAGGAAAACEST: gi|169030447|gb|FE437858.1|FE437858
genomic: CGGTATAGTAGCCTTCAATTGCGAAGTTGACGAGgtttgcttta ... tatttcgcagGCACTGGCACGGGAGATACGAGAGTACATAGCAAAGCGGTATCAGGAAAAC
EST: TATAGTAGCCTTCAATTGCGAAGTTGACGAG GCACTGGCACGAGAGATACGAGAGTACATAGCAAAGCGGTATCAGGAAAACEST: gi|169047328|gb|FE456161.1|FE456161
genomic: TATAGTAGCCTTCAATTGCGAAGTTGACGAGgtttgcttta ... tatttcgcagGCACTGGCACGGGAGATACGAGAGTACATAGCAAAGCGGTATCAGGAAAAC
EST: CCATCAGTGCATTCGGCGGTATAGTAGCCTTCAATTGCGAAGTTGACGAG GCACTGGCACGAGAGATACGAGAGTACATAGCAAAGCGGTATCAGGAAAACEST: gi|169078055|gb|FE489386.1|FE489386
genomic: CCGTCAGTGCATTCGGCGGTATAGTAGCCTTCAATTGCGAAGTTGACGAGgtttgcttta ... tatttcgcagGCACTGGCACGGGAGATACGAGAGTACATAGCAAAGCGGTATCAGGAAAAC
EST: CCATCAGTGCATTCGGCGGTATAGTAGCCTTCAATTGCGAAGTTGACGAG GCACTGGCACGAGAGATACGAGAGTACATAGCAAAGCGGTATCAGGAAAAC
genomic: CCGTCAGTGCATTCGGCGGTATAGTAGCCTTCAATTGCGAAGTTGACGAGgtttgcttta ... tatttcgcagGCACTGGCACGGGAGATACGAGAGTACATAGCAAAGCGGTATCAGGAAAAC
gtttgctttaatatcaactttttaacgtctacacgggcttttctatttcgcagGCACTGGCACGGGAGATACGAGAGTACATAGCAAAGCGGTATCAGGAAAACCAAACCAAAATGTTCTACGAGATTGTGGTGGCACCGAAGTACACCGAGA
ttttaac putative branch site (score: 4)
cttttctatttcgc putative PPT
tttaatatcaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgctttaatatcaactttttaacgtctacacgggcttttctatttcgcagGCACTGGCACGGGAGATACGAGAGTACATAGCAAAGCGGTATCAGGAAAACCAAACCAAAATGTTCTACGAGATTGTGGTGGCACCGAAGTACACCGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG