1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttctttcttctgtttgccatgtccgtttcgtaacaattcctttttctttgttgtcagAATCACATGAGCGAAATGTTTGCTTATCACGCAACGATGATGGCAAACACGCTGGGAACATCGATCCTGGTCTTCACGAGGAGCGGTTTCATGGCTGCCC
species | Selaginella moellendorffii |
transcript | EFJ15169 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTACACTTTCCGAGGAGGATTCACCTTGCACTCTTGGACGTGCTTTTAAG AATCACATGAGCGAAATGTTTGCTTATCACGCAACGATGATGGCAAACACGEST: gi|169082510|gb|FE489033.1|FE489033
genomic: CTACACTTTCCGAGGAGGATTCACCTTGCACTCTTGGACGTGCTTTTAAGgtttctttct ... ttgttgtcagAATCACATGAGCGAAATGTTTGCTTATCACGCAACGATGATGGCAAACACG
EST: CTACACTTTCCGAGGAGGATTCACCTTGCACTCTTGGACGTGCTTTTAAG AATCACATGAGCGAAATGTTTGCTTATCACGCAACGATGATGGCAAACACGEST: gi|169062425|gb|FE469484.1|FE469484
genomic: CTACACTTTCCGAGGAGGATTCACCTTGCACTCTTGGACGTGCTTTTAAGgtttctttct ... ttgttgtcagAATCACATGAGCGAAATGTTTGCTTATCACGCAACGATGATGGCAAACACG
EST: CTACACTTTCCGAGGAGGATTCACCTTGCACTCTTGGACGTGCTTTTAAG AATCACATGAGCGAAATGTTTGCTTATCACGCAACGATGATGGCAAACACGEST: gi|169077539|gb|FE485971.1|FE485971
genomic: CTACACTTTCCGAGGAGGATTCACCTTGCACTCTTGGACGTGCTTTTAAGgtttctttct ... ttgttgtcagAATCACATGAGCGAAATGTTTGCTTATCACGCAACGATGATGGCAAACACG
EST: CTACACTTTCCGAGGAGGATTCACCTTGCACTCTTGGACGTGCTTTTAAG AATCACATGAGCGAAATGTTTGCTTATCACGCAACGATGATGGCAAACACGEST: gi|169062426|gb|FE469485.1|FE469485
genomic: CTACACTTTCCGAGGAGGATTCACCTTGCACTCTTGGACGTGCTTTTAAGgtttctttct ... ttgttgtcagAATCACATGAGCGAAATGTTTGCTTATCACGCAACGATGATGGCAAACACG
EST: CTACACTTTCCGAGGAGGATTCACCTTGCACTCTTGGACGTGCTTTTAAG AATCACATGAGCGAAATGTTTGCTTATCACGCAACGATGATGGCAAACACGEST: gi|169079173|gb|FE488658.1|FE488658
genomic: CTACACTTTCCGAGGAGGATTCACCTTGCACTCTTGGACGTGCTTTTAAGgtttctttct ... ttgttgtcagAATCACATGAGCGAAATGTTTGCTTATCACGCAACGATGATGGCAAACACG
EST: CTACACTTTCCGAGGAGGATTCACCTTGCACTCTTGGACGTGCTTTTAAG AATCACATGAGCGAAATGTTTGCTTATCACGCAACGATGATGGCAAACACGEST: gi|169079824|gb|FE491233.1|FE491233
genomic: CTACACTTTCCGAGGAGGATTCACCTTGCACTCTTGGACGTGCTTTTAAGgtttctttct ... ttgttgtcagAATCACATGAGCGAAATGTTTGCTTATCACGCAACGATGATGGCAAACACG
EST: CTACACTTTCCGAGGAGGATTCACCTTGCACTCTTGGACGTGCTTTTAAG AATCACATGAGCGAAATGTTTGCTTATCACGCAACGATGATGGCAAACACG
genomic: CTACACTTTCCGAGGAGGATTCACCTTGCACTCTTGGACGTGCTTTTAAGgtttctttct ... ttgttgtcagAATCACATGAGCGAAATGTTTGCTTATCACGCAACGATGATGGCAAACACG
ctttcttctgtttgccatgtccgtttcgtaacaattcctttttctttgttgtcagAATCACATGAGCGAAATGTTTGCTTATCACGCAACGATGATGGCAAACACGCTGGGAACATCGATCCTGGTCTTCACGAGGAGCGGTTTCATGGCTGCCC
tcgtaac putative branch site (score: 25)
ttcctttttctttgtt putative PPT
tttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctttcttctgtttgccatgtccgtttcgtaacaattcctttttctttgttgtcagAATCACATGAGCGAAATGTTTGCTTATCACGCAACGATGATGGCAAACACGCTGGGAACATCGATCCTGGTCTTCACGAGGAGCGGTTTCATGGCTGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG