1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgaatatctctgcaaccttagtgaattcttattcgttttcacgcgcagGTGATCGCGGCAACAAACAGAGCAGATATTCTAGACCCGGCTCTGATGCGATCTGGCCGTCTGGACAGGAAGATCGAATTTCCTCATCCCACCGAGGATG
species | Selaginella moellendorffii |
transcript | EFJ15061 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGAGCTCTTAAATCAGCTTGATGGTTTCAGTAGCGACGACCGGATTAAG GTGATCGCGGCAACAAACAGAGCAGATATTCTAGACCCGGCTCTGATGCGAEST: gi|169074607|gb|FE481188.1|FE481188
genomic: TTGAGCTTTTAAATCAGCTTGATGGTTTCAGTAGCGACGACCGGATTAAGgtgaatatct ... tcacgcgcagGTGATCGCGGCAACAAACAGAGCAGATATTCTAGACCCGGCTCTGATGCGA
EST: TTGAGCTTTTAAATCAGCTTGATGGTTTCAGTAGCGACGACCGGATTAAG GTGATCGCAGCAACAAACAGAGCAGATATTCTAGACCCGGCTCTGATGCGAEST: gi|169105077|gb|FE505919.1|FE505919
genomic: TTGAGCTTTTAAATCAGCTTGATGGTTTCAGTAGCGACGACCGGATTAAGgtgaatatct ... tcacgcgcagGTGATCGCGGCAACAAACAGAGCAGATATTCTAGACCCGGCTCTGATGCGA
EST: TTGAGCTTTTAAATCAGCTTGATGGTTTCAGTAGCGACGACCGGATTAAG GTGATCGCAGCAACAAACAGAGCAGATATTCTAGACCCGGCTCTGATGCGA
genomic: TTGAGCTTTTAAATCAGCTTGATGGTTTCAGTAGCGACGACCGGATTAAGgtgaatatct ... tcacgcgcagGTGATCGCGGCAACAAACAGAGCAGATATTCTAGACCCGGCTCTGATGCGA
gtgaatatctctgcaaccttagtgaattcttattcgttttcacgcgcagGTGATCGCGGCAACAAACAGAGCAGATATTCTAGACCCGGCTCTGATGCGATCTGGCCGTCTGGACAGGAAGATCGAATTTCCTCATCCCACCGAGGATG
ttcttattcgttttc CT-rich tract
aattcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatatctctgcaaccttagtgaattcttattcgttttcacgcgcagGTGATCGCGGCAACAAACAGAGCAGATATTCTAGACCCGGCTCTGATGCGATCTGGCCGTCTGGACAGGAAGATCGAATTTCCTCATCCCACCGAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG