1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgagaaaagaaactttgctttgatctatccatcagctaacactctttttgttatttccgctagAAAATGCTGTGCTTGGATCCCAGCAGCCGCATCACCGCCAGAGCTGCCCTGGAGCACGACTACTTCAAAGATGCAGCATCGGCGGGCGTCGATCCATCAA
species | Selaginella moellendorffii |
transcript | EFJ15022 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCGCCACGCTGGTCCCAGGCCTGGAGCATGCAGGAGTCGACTTGCTCTCC AAAATGCTGTGCTTGGATCCCAGCAGCCGCATCACCGCCAGAGCTGCCCTGEST: gi|169019992|gb|FE430849.1|FE430849
genomic: TCGCCACGCTGGTCCCAGGCCTGGAGCACGCAGGAGTCGACTTGCTCTCCgtacgagaaa ... tttccgctagAAAATGCTGTGCTTGGATCCCAGCAGCCGCATCACCGCCAGAGCTGCCCTG
EST: TCGCCACGCTGGTCCCAGGCCTGGAGCACGCAGGAGTCGACTTGCTCTCC AAAATGCTGTGCTTGGATCCCAGCAGCCGCATCACCGCCAGAGCTGCCCTG
genomic: TCGCCACGCTGGTCCCAGGCCTGGAGCACGCAGGAGTCGACTTGCTCTCCgtacgagaaa ... tttccgctagAAAATGCTGTGCTTGGATCCCAGCAGCCGCATCACCGCCAGAGCTGCCCTG
gaaactttgctttgatctatccatcagctaacactctttttgttatttccgctagAAAATGCTGTGCTTGGATCCCAGCAGCCGCATCACCGCCAGAGCTGCCCTGGAGCACGACTACTTCAAAGATGCAGCATCGGCGGGCGTCGATCCATCAA
agctaac putative branch site (score: 25)
ctctttttgttatttc CT-rich tract
tctttttgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgagaaaagaaactttgctttgatctatccatcagctaacactctttttgttatttccgctagAAAATGCTGTGCTTGGATCCCAGCAGCCGCATCACCGCCAGAGCTGCCCTGGAGCACGACTACTTCAAAGATGCAGCATCGGCGGGCGTCGATCCATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG