1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgtttcatcaaatcctctgtgcaagggagagaattttcatgcgagtttttcttcgtttttgctacacagGTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTCGGAGCTAAGATCTTTTGGCGATGGCTCCACGAGTCTCTTTGTACAGCTC
species | Selaginella moellendorffii |
transcript | EFJ13527 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTG GTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTCEST: gi|169053891|gb|FE460982.1|FE460982
genomic: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTGgtacgtttca ... tgctacacagGTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTC
EST: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTG GTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTCEST: gi|169036019|gb|FE446725.1|FE446725
genomic: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTGgtacgtttca ... tgctacacagGTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTC
EST: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTG GTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTCEST: gi|169029062|gb|FE437565.1|FE437565
genomic: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTGgtacgtttca ... tgctacacagGTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTC
EST: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTG GTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTCEST: gi|169110151|gb|FE513366.1|FE513366
genomic: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTGgtacgtttca ... tgctacacagGTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTC
EST: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTG GTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTCEST: gi|169063898|gb|FE471253.1|FE471253
genomic: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTGgtacgtttca ... tgctacacagGTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTC
EST: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTG GTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTCEST: gi|169060302|gb|FE467872.1|FE467872
genomic: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTGgtacgtttca ... tgctacacagGTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTC
EST: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTG GTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTCEST: gi|169056262|gb|FE464397.1|FE464397
genomic: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTGgtacgtttca ... tgctacacagGTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTC
EST: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTG GTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTCEST: gi|169022853|gb|FE430257.1|FE430257
genomic: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTGgtacgtttca ... tgctacacagGTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTC
EST: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTG GTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTCEST: gi|169101856|gb|FE504936.1|FE504936
genomic: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTGgtacgtttca ... tgctacacagGTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTC
EST: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTG GTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTCEST: gi|169067932|gb|FE473451.1|FE473451
genomic: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTGgtacgtttca ... tgctacacagGTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTC
EST: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTG GTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTCEST: gi|169067931|gb|FE473450.1|FE473450
genomic: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTGgtacgtttca ... tgctacacagGTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTC
EST: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTG GTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTC
genomic: ATATCCTTGCTGTGCAAGCACGTCTTTTGCGAGGATTGCGTCTCCGAGTGgtacgtttca ... tgctacacagGTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTC
ctctgtgcaagggagagaattttcatgcgagtttttcttcgtttttgctacacagGTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTCGGAGCTAAGATCTTTTGGCGATGGCTCCACGAGTCTCTTTGTACAGCTC
tttttcttcgtttttg CT-rich tract
aattttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtttcatcaaatcctctgtgcaagggagagaattttcatgcgagtttttcttcgtttttgctacacagGTTTGAGAGGGAGCGAACTTGTCCATTATGTCGATCGGTTGTGAAGTCGTCGGAGCTAAGATCTTTTGGCGATGGCTCCACGAGTCTCTTTGTACAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC