1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttccgtgcttcgaggaaagctgccattcaaactttcggggcattgctttttacagGATTTGGTCGAGGATGCTATTACGGATCAGTTAGAGTGGCCTCACAGGAGAGTGATACCCATTGGAGGACTTCCTGTTGACATAAG
species | Selaginella moellendorffii |
transcript | EFJ13306 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGATTGGTGGAAGCTTGACAGGAGTTCCTGGCCTCGCAGACATGATAAAG GATTTGGTCGAGGATGCTATTACGGATCAGTTAGAGTGGGCTCACAEST: gi|169018992|gb|FE427385.1|FE427385
genomic: TGATTGGTGGAAGCTTGACAGGAGTTCCTGGCCTCGCAGACATGATAAAGgttccgtgct ... ctttttacagGATTTGGTCGAGGATGCTATTACGGATCAGTTAGAGTGGCCTCACA
EST: TGATTGGTGGAAGCTTGACAGGAGTTCCTGGCCTCGCAGACATGATAAAG GATTTGGTCGAGGATGCTATTACGGATCAGTTAGAGTGGCCTCACAGGAGGEST: gi|169024377|gb|FE434341.1|FE434341
genomic: TGATTGGTGGAAGCTTGACAGGAGTTCCTGGCCTCGCAGACATGATAAAGgttccgtgct ... ctttttacagGATTTGGTCGAGGATGCTATTACGGATCAGTTAGAGTGGCCTCACAGGAGA
EST: GATTGGT-GAAGCTTTGACAGGAGTTCCTGGCCTCGCAGACATGATAAAG GATTTGGTCGAGGATGCTATTACGGATCAGTTAGAGTGGCCTCACAGGAGG
genomic: GATTGGTGGAAGC-TTGACAGGAGTTCCTGGCCTCGCAGACATGATAAAGgttccgtgct ... ctttttacagGATTTGGTCGAGGATGCTATTACGGATCAGTTAGAGTGGCCTCACAGGAGA
ttccgtgcttcgaggaaagctgccattcaaactttcggggcattgctttttacagGATTTGGTCGAGGATGCTATTACGGATCAGTTAGAGTGGCCTCACAGGAGAGTGATACCCATTGGAGGACTTCCTGTTGACATAAG
ttgcttttt CT-rich tract
tttttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttccgtgcttcgaggaaagctgccattcaaactttcggggcattgctttttacagGATTTGGTCGAGGATGCTATTACGGATCAGTTAGAGTGGCCTCACAGGAGAGTGATACCCATTGGAGGACTTCCTGTTGACATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA