1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaaagaacactttcatcgcgagatcgattagtcaattcttttccagGTCGTCGATGCTGTACAAGCTGTGAAGACTGTTAACGAGAAGGGGGAGACGAAATATCCCATTAAG
species | Selaginella moellendorffii |
transcript | EFJ12438 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCATGTCGTCTAAGATTATTGGTACAGACAGTGACTTTTTCGCGAAAATG GTCGTCGATGCTGTACAAGCTGTGAAGACTGTTAACGAGAAGGGCGAGACGEST: gi|169076304|gb|FE485750.1|FE485750
genomic: GCATGTCGTCTAAGATTATTGGTACAGACAGTGACTTTTTCGCGAAAATGgtaaagaaca ... tcttttccagGTCGTCGATGCTGTACAAGCTGTGAAGACTGTTAACGAGAAGGGGGAGACG
EST: GCATGTCGTCTAAGATTATTGGTACAGACAGTGACTTTTTCGCGAAAATG GTCGTCGATGCTGTACAAGCTGTGAAGACTGTTAACGAGAAGGGCGAGACGEST: gi|169113411|gb|FE514738.1|FE514738
genomic: GCATGTCGTCTAAGATTATTGGTACAGACAGTGACTTTTTCGCGAAAATGgtaaagaaca ... tcttttccagGTCGTCGATGCTGTACAAGCTGTGAAGACTGTTAACGAGAAGGGGGAGACG
EST: GCATGTCGTCTAAGATTATTGGTACAGACAGTGACTTTTTCGCGAAAATG GTCGTCGATGCTGTACAAGCTGTGAAGACTGTTAACGAGAAGGGGGAGACGEST: gi|169065292|gb|FE473193.1|FE473193
genomic: GCATGTCGTCTAAGATTATTGGTACAGACAGTGACTTTTTCGCGAAAATGgtaaagaaca ... tcttttccagGTCGTCGATGCTGTACAAGCTGTGAAGACTGTTAACGAGAAGGGGGAGACG
EST: GCATGTCGTCTAAGATTATTGGTACAGACAGTGACTTTTTCGCGAAAATG GTCGTCGATGCTGTACAAGCTGTGAAGACTGTTAACGAGAAGGGCGAGACGEST: gi|169042176|gb|FE454219.1|FE454219
genomic: GCATGTCGTCTAAGATTATTGGTACAGACAGTGACTTTTTCGCGAAAATGgtaaagaaca ... tcttttccagGTCGTCGATGCTGTACAAGCTGTGAAGACTGTTAACGAGAAGGGGGAGACG
EST: GCATGTCGTCTAAGATTATTGGTACAGACAGTGACTTTTTCGCGAAAATG GTCGTCGATGCTGTACAAGCTGTGAAGACTGTTAACGAGAAGGGGGAGACG
genomic: GCATGTCGTCTAAGATTATTGGTACAGACAGTGACTTTTTCGCGAAAATGgtaaagaaca ... tcttttccagGTCGTCGATGCTGTACAAGCTGTGAAGACTGTTAACGAGAAGGGGGAGACG
gtaaagaacactttcatcgcgagatcgattagtcaattcttttccagGTCGTCGATGCTGTACAAGCTGTGAAGACTGTTAACGAGAAGGGGGAGACGAAATATCCCATTAAG
ttcttttcc CT-rich tract
aattctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagaacactttcatcgcgagatcgattagtcaattcttttccagGTCGTCGATGCTGTACAAGCTGTGAAGACTGTTAACGAGAAGGGGGAGACGAAATATCCCATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA