1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaatctcgtgtcgaattctttcctcgcagctaatcgtggatgtgttttcggtgtgttacacagGTTCGTTCGCTCATCAAGCGAAAAGATGCCAAGTATAAGATGAAAGTCAAGGCCAGGAACTCTAGAAAAGCTCACGTAGAGGCAAACGCGCTAGAACCGA
species | Selaginella moellendorffii |
transcript | EFJ12424 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGGTGGGAAGCCGCTGTACGAGAATCCCTTCTACACGGCTCCCAACATG GTTCGTTCGCTCATCAAGCGAANAGATGCCAAGTATAAGATGAAAGTNCA-EST: gi|169049030|gb|FE456108.1|FE456108
genomic: TGGGTGGGAAGCCGCTGTACGAGAATCCCTTCTACACGGCTCCAAACATGgtaaatctcg ... tgttacacagGTTCGTTCGCTCATCAAGCGAAAAGATGCCAAGTATAAGATGAAAGT-CAA
EST: TGGGTGGGAAGCCGCTGTACGAGAATCCCTTTTACACGGCTCCAAACATG GTTCGTTCGCTCATCAAGGGAAAAGATGCCAAGTATAAGATGAAAGTCAAGEST: gi|169071863|gb|FE477617.1|FE477617
genomic: TGGGTGGGAAGCCGCTGTACGAGAATCCCTTCTACACGGCTCCAAACATGgtaaatctcg ... tgttacacagGTTCGTTCGCTCATCAAGCGAAAAGATGCCAAGTATAAGATGAAAGTCAAG
EST: TGGGTGGGAAGCCGCTGTACGAGAATCCCTTCTACACGGCTCCAAACATG GTTCGTTCGCTCATCAAGCGAAAAGATGCCAAGTATAAGATGAAAGTCAAGEST: gi|169060062|gb|FE468672.1|FE468672
genomic: TGGGTGGGAAGCCGCTGTACGAGAATCCCTTCTACACGGCTCCAAACATGgtaaatctcg ... tgttacacagGTTCGTTCGCTCATCAAGCGAAAAGATGCCAAGTATAAGATGAAAGTCAAG
EST: TGGGTGGGAAGCCGCTGTACGAGAATCCCTTCTACACGGCTCCAAACATG GTTCGTTCGCTCATCAAGCGAAAAGATGCCAAGTATAAGATGAAAGTCAAGEST: gi|169099356|gb|FE502129.1|FE502129
genomic: TGGGTGGGAAGCCGCTGTACGAGAATCCCTTCTACACGGCTCCAAACATGgtaaatctcg ... tgttacacagGTTCGTTCGCTCATCAAGCGAAAAGATGCCAAGTATAAGATGAAAGTCAAG
EST: TGGGTGGGAAGCCGCTGTACGAGAATCCCTTCTACACGGCTCCAAACATG GTTCGTTCGCTCATCAAGCGAAAAGATGCCAAGTATAAGATGAAAGTCAAGEST: gi|169053952|gb|FE461251.1|FE461251
genomic: TGGGTGGGAAGCCGCTGTACGAGAATCCCTTCTACACGGCTCCAAACATGgtaaatctcg ... tgttacacagGTTCGTTCGCTCATCAAGCGAAAAGATGCCAAGTATAAGATGAAAGTCAAG
EST: TGGGTGGGAAGCCGCTGTACGAGAATCCCTTCTACACGGCTCCAAACATG GTTCGTTCGCTCATCAAGCGAAAAGATGCCAAGTATAAGATGAAAGTCAAG
genomic: TGGGTGGGAAGCCGCTGTACGAGAATCCCTTCTACACGGCTCCAAACATGgtaaatctcg ... tgttacacagGTTCGTTCGCTCATCAAGCGAAAAGATGCCAAGTATAAGATGAAAGTCAAG
tgtcgaattctttcctcgcagctaatcgtggatgtgttttcggtgtgttacacagGTTCGTTCGCTCATCAAGCGAAAAGATGCCAAGTATAAGATGAAAGTCAAGGCCAGGAACTCTAGAAAAGCTCACGTAGAGGCAAACGCGCTAGAACCGA
agctaat putative branch site (score: 9)
aattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatctcgtgtcgaattctttcctcgcagctaatcgtggatgtgttttcggtgtgttacacagGTTCGTTCGCTCATCAAGCGAAAAGATGCCAAGTATAAGATGAAAGTCAAGGCCAGGAACTCTAGAAAAGCTCACGTAGAGGCAAACGCGCTAGAACCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA