1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttacttctcctgcaagaaaacgtctaccaacgtgctaaccgtggtattgttggcagATGCACTTGTTTAGACAAGGCCTTGGTTGCCTAGACGATGCCGACCCTTGCATAAGTCGGATAGTGCAAGAACGTAATCTAGATACCTCGTTGGACTATC
species | Selaginella moellendorffii |
transcript | EFJ12059 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTCGTCCTCGACACCTTCTCACGCAAGCTGCTCGGCATCACTCAGCTCAG ATGCACTTGTTTAGACAAGGCCTTGGTTGCCTAGACGATGCCGACCCTTGCEST: gi|169065102|gb|FE474550.1|FE474550
genomic: GTCGTCCTCGACACCTTCTCACGCAAGCTGCTCGGCATCACTCAGCTCAGgtttacttct ... ttgttggcagATGCACTTGTTTAGACAAGGCCTTGGTTGCCTAGACGATGCCGACCCTTGC
EST: GTCGTCCTCGACACCTTCTCACGCAAGCTGCTCGGCATCACTCAGCTCAG ATGCACTTGTTTAGACAAGGCCTTGGTTGCCTAGACGATGCCGACCCTTGCEST: gi|169038386|gb|FE446087.1|FE446087
genomic: GTCGTCCTCGACACCTTCTCACGCAAGCTGCTCGGCATCACTCAGCTCAGgtttacttct ... ttgttggcagATGCACTTGTTTAGACAAGGCCTTGGTTGCCTAGACGATGCCGACCCTTGC
EST: CTCACGCAAGCTGCTCGGCATCACTCAGCTCAG ATGCACTTGTTTAGACAAGGCCTTGGTTGCCTAGACGATGCCGACCCTTGC
genomic: CTCACGCAAGCTGCTCGGCATCACTCAGCTCAGgtttacttct ... ttgttggcagATGCACTTGTTTAGACAAGGCCTTGGTTGCCTAGACGATGCCGACCCTTGC
tacttctcctgcaagaaaacgtctaccaacgtgctaaccgtggtattgttggcagATGCACTTGTTTAGACAAGGCCTTGGTTGCCTAGACGATGCCGACCCTTGCATAAGTCGGATAGTGCAAGAACGTAATCTAGATACCTCGTTGGACTATC
tgctaac putative branch site (score: 7)
aagaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttacttctcctgcaagaaaacgtctaccaacgtgctaaccgtggtattgttggcagATGCACTTGTTTAGACAAGGCCTTGGTTGCCTAGACGATGCCGACCCTTGCATAAGTCGGATAGTGCAAGAACGTAATCTAGATACCTCGTTGGACTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC