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gtaagcacattcgtttgtgtcttagagagtgccatgatgaaaagctttgttgttttgaagGTCCGCAACTTCAATCCCCATCCAGAGATCAACACCAGCATCAAG
species | Selaginella moellendorffii |
transcript | EFJ12009 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGAGCAGGAGCTATGTTGCGGCCAACATTGTGGAGCACAAGGAGTTCTGG GTCCGCAACTTCAATCCCCATCCAGAGATCAACACCAGCATCAAGEST: gi|169022142|gb|FE430971.1|FE430971
genomic: TGAGCAGGAGCTATGTTGCGGCCAACATTGTGGAGCACAAGGAGTTCTGGgtaagcacat ... tgttttgaagGTCCGCAACTTCAATCCCCATCCAGAGATCAACACCAGCATCAAG
EST: TGAGCAGGAGCTATGTTGCGGCCAACATTGTGGAGCACAAGGAGTTCTGG GTCCGCAACTTCAATCCCCATCCAGAGATCAACACCAGCATCAAGEST: gi|169047468|gb|FE455663.1|FE455663
genomic: TGAGCAGGAGCTATGTTGCGGCCAACATTGTGGAGCACAAGGAGTTCTGGgtaagcacat ... tgttttgaagGTCCGCAACTTCAATCCCCATCCAGAGATCAACACCAGCATCAAG
EST: TGAGCAGGAGCTATGTTGCGGCCAACATTGTGGAGCACAAGGAGTTCTGG GTCCGCAACTTCAATCCCCATCCAGAGATCAACACCAGCATCAAG
genomic: TGAGCAGGAGCTATGTTGCGGCCAACATTGTGGAGCACAAGGAGTTCTGGgtaagcacat ... tgttttgaagGTCCGCAACTTCAATCCCCATCCAGAGATCAACACCAGCATCAAG
cacattcgtttgtgtcttagagagtgccatgatgaaaagctttgttgttttgaagGTCCGCAACTTCAATCCCCATCCAGAGATCAACACCAGCATCAAG
ctttgtt CT-rich tract
atgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcacattcgtttgtgtcttagagagtgccatgatgaaaagctttgttgttttgaagGTCCGCAACTTCAATCCCCATCCAGAGATCAACACCAGCATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA