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gttggcttttcctccctgtgtccttggatagtaaactctgctgcagGCATTTGCACGCCTGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGCCAGACTGCACG
species | Selaginella moellendorffii |
transcript | EFJ11673 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCGGTTCCCCTTATATTTATCCGCTCTATGGCTTGGGAGAACTTCCTCAG GCATTTGCACGCCTGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGEST: gi|169024779|gb|FE435471.1|FE435471
genomic: GCGGTTCCCCTTATATTTATCCGCTCTATGGCTTGGGAGAACTTCCTCAGgttggctttt ... tctgctgcagGCATTTGCACGCCTGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAG
EST: GCGGTTCCCCTTATATTTATCCGCTCTATGGCTTGGGAGAACTTCCTCAG GCATTTGCACGCCTGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGEST: gi|169038310|gb|FE445309.1|FE445309
genomic: GCGGTTCCCCTTATATTTATCCGCTCTATGGCTTGGGAGAACTTCCTCAGgttggctttt ... tctgctgcagGCATTTGCACGCCTGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAG
EST: GCGGTTCCCCTTATATTTATCCGCTCTATGGCTTGGGAGAACTTCCTCAG GCATTTGCACGCCTGAGTGCCGTEST: gi|169092637|gb|FE493657.1|FE493657
genomic: GCGGTTCCCCTTATATTTATCCGCTCTATGGCTTGGGAGAACTTCCTCAGgttggctttt ... tctgctgcagGCATTTGCACGCCTGAGTGCCGT
EST: CGGTTCCCCCTTATATTTATCCGCTCTATGGCTGGGGAGAACTTCCTCAG GCATTTGCACGCCTGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGEST: gi|169038296|gb|FE445308.1|FE445308
genomic: CGGTT-CCCCTTATATTTATCCGCTCTATGGCTTGGGAGAACTTCCTCAGgttggctttt ... tctgctgcagGCATTTGCACGCCTGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAG
EST: GCGGTTCCCCTTATATTTATCCGCTCTATGGCTTGGGAGAACTTCCTCAG GCATTTGCACGCCTGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGEST: gi|169092638|gb|FE493658.1|FE493658
genomic: GCGGTTCCCCTTATATTTATCCGCTCTATGGCTTGGGAGAACTTCCTCAGgttggctttt ... tctgctgcagGCATTTGCACGCCTGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAG
EST: GCGGTTCCCCTTATATTTATCCGCTCTATGGCTTGGGAGAACTTCCTCAG GCATTTGCACGCCTGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGEST: gi|169083494|gb|FE491925.1|FE491925
genomic: GCGGTTCCCCTTATATTTATCCGCTCTATGGCTTGGGAGAACTTCCTCAGgttggctttt ... tctgctgcagGCATTTGCACGCCTGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAG
EST: TTATATTTATCCGCTCTATGGC-TGAGGAGAACTTCCTCAG GCATTTGCACGCCTGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAG
genomic: TTATATTTATCCGCTCTATGGCTTG-GGAGAACTTCCTCAGgttggctttt ... tctgctgcagGCATTTGCACGCCTGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAG
gttggcttttcctccctgtgtccttggatagtaaactctgctgcagGCATTTGCACGCCTGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGCCAGACTGCACG
ctctgct CT-rich tract
atagtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggcttttcctccctgtgtccttggatagtaaactctgctgcagGCATTTGCACGCCTGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGCCAGACTGCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC