1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttctctatccctctcttgatagttttcactcctgaagagatttccttctcagGTGGCGGGAGTTGTAACACAAGCCATAGCAAGAATGGAAGGCGAAGTTGCAAGACACAAAGCTGAAGCGGATCTAAAGGAAGAGAAAAACCACGAACCAC
species | Selaginella moellendorffii |
transcript | EFJ09297 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCCTGAGAGTACTAGACCATTCCAAGATAGACATGTTGAAACCATTCAAG GTGGCGGGAGTTGTAACACAAGCCATAGCAAGAATGGAAGGCGAAGTTGCAEST: gi|169080517|gb|FE490509.1|FE490509
genomic: GCCTGAGAGTACTAGACCATTCCAAGATAGACATGTTGAAACCATTCAAGgttctctatc ... tccttctcagGTGGCGGGAGTTGTAACACAAGCCATAGCAAGAATGGAAGGCGAAGTTGCA
EST: GCCTGAGAGTACTAGACCATTCCAAGATAGACATGTTGAAACCATTCAAG GTGGCGGGAGTTGTAACACAAGCCATAGCAAGAATGGAAGGCGAAGTTGCAEST: gi|169060106|gb|FE468092.1|FE468092
genomic: GCCTGAGAGTACTAGACCATTCCAAGATAGACATGTTGAAACCATTCAAGgttctctatc ... tccttctcagGTGGCGGGAGTTGTAACACAAGCCATAGCAAGAATGGAAGGCGAAGTTGCA
EST: GCCTGAGAGTACTAGACCATTCCAAGATAGACATGTTGAAACCATTCAAG GTGGCGGGAGTTGTAACACAAGCCATAGCAAGAATGGAAGGCGAAGTTGCA
genomic: GCCTGAGAGTACTAGACCATTCCAAGATAGACATGTTGAAACCATTCAAGgttctctatc ... tccttctcagGTGGCGGGAGTTGTAACACAAGCCATAGCAAGAATGGAAGGCGAAGTTGCA
gttctctatccctctcttgatagttttcactcctgaagagatttccttctcagGTGGCGGGAGTTGTAACACAAGCCATAGCAAGAATGGAAGGCGAAGTTGCAAGACACAAAGCTGAAGCGGATCTAAAGGAAGAGAAAAACCACGAACCAC
tcttgat putative branch site (score: 9)
tttccttctc putative PPT
atagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctctatccctctcttgatagttttcactcctgaagagatttccttctcagGTGGCGGGAGTTGTAACACAAGCCATAGCAAGAATGGAAGGCGAAGTTGCAAGACACAAAGCTGAAGCGGATCTAAAGGAAGAGAAAAACCACGAACCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA