1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaggtacagaaaaacaaattctgagagctttatcctcggtggtcttacctctgcttgatcccagATATGTGGAGACAAATGGTCGAGCTTCCTAGCATGGATGAACTCGTCGGTAATCCTGGACTACTGTCGTTCTTCATTGCTAGCAAGATGCCGCTTCCAGA
species | Selaginella moellendorffii |
transcript | EFJ07516 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGGGTCTACCGGATGTATGACGCGTATGATCTATCTCGCAGAGCAGCAGGTAAGEST: gi|169049177|gb|FE457165.1|FE457165
genomic: CTGGGTCTACCGGATGTATGACGCGTATGATCTATCTCGCAGAGCAGC-----AGgtaaggtaca ... ttgatc
EST: CTGGGTCTACCGGATGTATGACGCGTATGATCTATCTCGCACAGCAGCAG ATATGTGGAGACAAATGGTCGAGCTTCCTAGCATGGATGAACTCEST: gi|169059431|gb|FE468054.1|FE468054
genomic: CTGGGTCTACCGGATGTATGACGCGTATGATCTATCTCGCAGAGCAGCAGgtaaggtaca ... ttgatcccagATATGTGGAGACAAATGGTCGAGCTTCCTAGCATGGATGAACTC
EST: CTGGGTCTACCGGATGTATGACGCGTATGATCTATCTCGCAGAGCAGCAG ATATGTGGAGACAAATGGTCGAGCTTCCTAGCATGGATGAACTCGTCGGTA
genomic: CTGGGTCTACCGGATGTATGACGCGTATGATCTATCTCGCAGAGCAGCAGgtaaggtaca ... ttgatcccagATATGTGGAGACAAATGGTCGAGCTTCCTAGCATGGATGAACTCGTCGGTA
aaaaacaaattctgagagctttatcctcggtggtcttacctctgcttgatcccagATATGTGGAGACAAATGGTCGAGCTTCCTAGCATGGATGAACTCGTCGGTAATCCTGGACTACTGTCGTTCTTCATTGCTAGCAAGATGCCGCTTCCAGA
tcttacctctgctt CT-rich tract
aaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggtacagaaaaacaaattctgagagctttatcctcggtggtcttacctctgcttgatcccagATATGTGGAGACAAATGGTCGAGCTTCCTAGCATGGATGAACTCGTCGGTAATCCTGGACTACTGTCGTTCTTCATTGCTAGCAAGATGCCGCTTCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG