Sequence
atgc intronic sequence ATGC exonic sequencegttgtttttaaaacgttctttcagtttcccaggcttatcttcatacttctcattggtgccacacagGTGTACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGACGTGAGCTCGAAGGAGTTTTACGGGGAGGGATACGATGACAGCGACAAGC
Basic information
species | Selaginella moellendorffii |
transcript | EFJ07025 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ07025 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: GRMZM2G063949_T01 (Zea mays), 3'ss of exon 7
--------------------------------gttgtttttaaaacgttctttcagtttcccaggcttatcttcatacttctcattggtgccac--acagGTGTACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGACGTGAGCTCGAAGGAGTTTTACGGGGAGGGATACGATGACAGCGACAAGC
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agtcatctctgtcgatgaaatggatgtgcgcacatgtaattgtgaagcaagagcgtttccatcctctttactactaattggcaaagcattgcacgagtagGTCTACGCAAATGTCTCAGGAGAGGCACCGCTGGATGAGCCCATGATTGACGTGAGCTCGAGTCAGTTCTACGGTGAAGGATACGATGATAGCGACAAGA
upper sequence: EFJ07025 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: AT1G08200.1 (Arabidopsis thaliana), 3'ss of exon 7
-------------gttgtttttaaaacgttctttcagtttcc-caggcttatctt--catacttctcattggtgccacaca-----------gGTGTACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGACGTGAGCTCGAAGGAGTTTTACGGGGAGGGATACGATGACAGCGACAAGC
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gtgagaaaaattggtcatagataagaatctgagtgattttcgataaaactattatagcacacgctcaaatgttgcaaaacaaaaaatggacagGTCTACGCCAAAGTGAGTGGAGAGACAGCTATCGAGAGTCCAACGATCGACGTGAGCTCCAAAGAGTTTTATGGAGAAGGTTATGATGACAGCGACAAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacgttctttcagtttcccaggcttatcttcatacttctcattggtgccacacagGTGTACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGACGTGAGCTCGAAGGAGTTTTACGGGGAGGGATACGATGACAGCGACAAGC
ttatctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgtttttaaaacgttctttcagtttcccaggcttatcttcatacttctcattggtgccacacagGTGTACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGACGTGAGCTCGAAGGAGTTTTACGGGGAGGGATACGATGACAGCGACAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG