1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtagaattaattcttgtcagaaaaatgatttcttagacgtattatttttgcagGTGGACGGATTTTTCAAAACGAGTAACGAGGATGTCTACGCAGTTGGAGATATCGCAACGTTTCCGATGAAAATCTATGGAGAGCAGAGGAGAGTTGAGC
species | Selaginella moellendorffii |
transcript | EFJ06061 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAG GTGGACGGATTTTTCAAAACGAGTAACGAGGATGTCTACGCAGTTGGAGATEST: gi|169066869|gb|FE473649.1|FE473649
genomic: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAGgtaagtagaa ... atttttgcagGTGGACGGATTTTTCAAAACGAGTAACGAGGATGTCTACGCAGTTGGAGAT
EST: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAG GTGGACGGATTTTTCAAAACGAGTAACGAGGATGTCTACGCAGTTGGAGATEST: gi|169054711|gb|FE460507.1|FE460507
genomic: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAGgtaagtagaa ... atttttgcagGTGGACGGATTTTTCAAAACGAGTAACGAGGATGTCTACGCAGTTGGAGAT
EST: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAG GTGGACGGGTTTTTCAAAACGAATAACGAGGATGTCTACGCAGTTGGAGATEST: gi|169050020|gb|FE458112.1|FE458112
genomic: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAGgtaagtagaa ... atttttgcagGTGGACGGATTTTTCAAAACGAGTAACGAGGATGTCTACGCAGTTGGAGAT
EST: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAG GTGGACGGGTTTTTCAAAACGAATAACGAGGATGTCTACGCAGTTGGAGATEST: gi|169055396|gb|FE463766.1|FE463766
genomic: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAGgtaagtagaa ... atttttgcagGTGGACGGATTTTTCAAAACGAGTAACGAGGATGTCTACGCAGTTGGAGAT
EST: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAG GTGGACGGATTTTTCAAAACGAGTAACGAGGATGTCTACGCAGTTGGAGATEST: gi|169098861|gb|FE502258.1|FE502258
genomic: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAGgtaagtagaa ... atttttgcagGTGGACGGATTTTTCAAAACGAGTAACGAGGATGTCTACGCAGTTGGAGAT
EST: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAG GTGGACGGATTTTTCAAAACGAGTAACGAGGATGTCTACGCAGTTGGAGATEST: gi|169041821|gb|FE449340.1|FE449340
genomic: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAGgtaagtagaa ... atttttgcagGTGGACGGATTTTTCAAAACGAGTAACGAGGATGTCTACGCAGTTGGAGAT
EST: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAG GTGGACGGGTTTTTCAAAACGAATAACGAGGATGTCTACGCAGTTGGAGATEST: gi|169041822|gb|FE449341.1|FE449341
genomic: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAGgtaagtagaa ... atttttgcagGTGGACGGATTTTTCAAAACGAGTAACGAGGATGTCTACGCAGTTGGAGAT
EST: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAG GTGGACGGGTTTTTCAAAACGAATAACGAGGATGTCTACGCAGTTGGAGATEST: gi|169066650|gb|FE475432.1|FE475432
genomic: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAGgtaagtagaa ... atttttgcagGTGGACGGATTTTTCAAAACGAGTAACGAGGATGTCTACGCAGTTGGAGAT
EST: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAG GTGGACGGGTTTTTCAAAACGAATAACGAGGATGTCTACGCAGTTGGAGAT
genomic: TCACTACGCTATTCAAGGGACAGCTTGAGGAAGAGAAAGGAGGCATCAAGgtaagtagaa ... atttttgcagGTGGACGGATTTTTCAAAACGAGTAACGAGGATGTCTACGCAGTTGGAGAT
aagtagaattaattcttgtcagaaaaatgatttcttagacgtattatttttgcagGTGGACGGATTTTTCAAAACGAGTAACGAGGATGTCTACGCAGTTGGAGATATCGCAACGTTTCCGATGAAAATCTATGGAGAGCAGAGGAGAGTTGAGC
aattaat putative branch site (score: 90)
ttattttt putative PPT
aaaaatgatttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagaattaattcttgtcagaaaaatgatttcttagacgtattatttttgcagGTGGACGGATTTTTCAAAACGAGTAACGAGGATGTCTACGCAGTTGGAGATATCGCAACGTTTCCGATGAAAATCTATGGAGAGCAGAGGAGAGTTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA