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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttcaagcttttttctgaaacaatcgcgcaaagttgatgtttctttgtagGTCCACGCTGTGGTAGATTCACTACGTGAAGCGCGAGGTGCTCTCCATACGTCATTCGCATGCTACAAGTTTCTGATTATTTATGGCCTCCAGTTCTCAA

Basic information

species Selaginella moellendorffii
transcript EFJ04362
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169023904|gb|FE436429.1|FE436429
EST:     GTGCTGCAGAAGCATCGGTGGTGTCTCCATTTACTGCCCGAAACAAATCG                         GTCCAAGCTGTGGTAGATTTACTACGTGAAGCGCGAGGTGCTCTCCATACG
genomic: GTGCTGCAGAAGCATCGGTGGTGTCTCCATTTACTGCCCGAAACAAATCGgtcagttcaa ... ttctttgtagGTCCACGCTGTGGTAGATTCACTACGTGAAGCGCGAGGTGCTCTCCATACG
EST: gi|169099024|gb|FE501758.1|FE501758
EST:     GTGCTGCAGAAGCATCGGTGGTGTCTCCATTTACTGCCCGAAACAAATCG                         GTCCAAGCTGTGGTAGATTTACTACGTGAAGCGCGAGGTGCTCTCCATACG
genomic: GTGCTGCAGAAGCATCGGTGGTGTCTCCATTTACTGCCCGAAACAAATCGgtcagttcaa ... ttctttgtagGTCCACGCTGTGGTAGATTCACTACGTGAAGCGCGAGGTGCTCTCCATACG
EST: gi|169093587|gb|FE492345.1|FE492345
EST:     CATTTACTGCCCGAAACAAATCG                         GTCCAAGCTGTGGTAGATTTACTACGTGAAGCGCGAGGTGCTCTCCATACG
genomic: CATTTACTGCCCGAAACAAATCGgtcagttcaa ... ttctttgtagGTCCACGCTGTGGTAGATTCACTACGTGAAGCGCGAGGTGCTCTCCATACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcagttcaagcttttttctgaaacaatcgcgcaaagttgatgtttctttgtagGTCCACGCTGTGGTAGATTCACTACGTGAAGCGCGAGGTGCTCTCCATACGTCATTCGCATGCTACAAGTTTCTGATTATTTATGGCCTCCAGTTCTCAA
                                    agttgat  putative branch site (score: 5)
                                          tgtttcttt  CT-rich tract
             ttttttct  TA-rich tract