1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttggtagtttttttacacaagctcatgtattgataggatgcactgtttgacagTCACGTAAGACAGCAGAATTACTGCTTGATGTTAGAGCAGGAAACATTTTTTCCGGTCCGCAACCTTGCTCTGTGAGCACGGCAGCTTCAATCGCCGAG
species | Selaginella moellendorffii |
transcript | EFJ38867 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GATTTCCATCCTCGGACAAGGAAACCATGAACATGCTGGGAGTTATTCAG TCACGTAAGACAGCAGAAATACTGCTTGATGTTAGAGCAGGAAACATEST: gi|169113687|gb|FE514793.1|FE514793
genomic: GATTTCCATCCTCGGACAAGGAAACCATGAACATGCTGGGAGTTATTCAGgtttggtagt ... tgtttgacagTCACGTAAGACAGCAGAATTACTGCTTGATGTTAGAGCAGGAAACAT
EST: GATTTCCATCCTCGGACAAGGAAACCATGAACATGCTGGGAGTTATTCAG TCACGTAAGACAGCAGAATTACTGCTTGATGTTAGAGCAGGAAACATTTTTEST: gi|169046389|gb|FE457393.1|FE457393
genomic: GATTTCCATCCTCGGACAAGGAAACCATGAACATGCTGGGAGTTATTCAGgtttggtagt ... tgtttgacagTCACGTAAGACAGCAGAATTACTGCTTGATGTTAGAGCAGGAAACATTTTT
EST: GATTTCCATCCTCGGACAAGGAAACCATGAACATGCTGGGAGTTATTCAG TCACGTAAGACAGC
genomic: GATTTCCATCCTCGGACAAGGAAACCATGAACATGCTGGGAGTTATTCAGgtttggtagt ... tgtttgacagTCACGTAAGACAGC
gtttggtagtttttttacacaagctcatgtattgataggatgcactgtttgacagTCACGTAAGACAGCAGAATTACTGCTTGATGTTAGAGCAGGAAACATTTTTTCCGGTCCGCAACCTTGCTCTGTGAGCACGGCAGCTTCAATCGCCGAG
tattgat putative branch site (score: 2)
tagttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggtagtttttttacacaagctcatgtattgataggatgcactgtttgacagTCACGTAAGACAGCAGAATTACTGCTTGATGTTAGAGCAGGAAACATTTTTTCCGGTCCGCAACCTTGCTCTGTGAGCACGGCAGCTTCAATCGCCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT