Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttttttcttgctttcctagacaaggtaagctactaactagagtccttccagAAAATACGAACGCCGTGCCTAAAGCAGCTGGATGGGAACCTTCTGCGCGATCAGTCGATCTTTCTTCCTTAATGAATCCTGATAT

Basic information

species Selaginella moellendorffii
transcript EFJ38728
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169101229|gb|FE501960.1|FE501960
EST:     TGACTTAAGACATTGTTTTGTCACGTCAGCTACCTTTGAAGAATTCGGTG                         AAAATACGAACGCCGTGCCTAAAGCAGCTGGATGGGAACCTTCTGCGCGAT
genomic: TGACTTAAGACATTGTTTTGTCACGTCAGCTACCTTTGAAGAATTCGGTGgtatgttttt ... gtccttccagAAAATACGAACGCCGTGCCTAAAGCAGCTGGATGGGAACCTTCTGCGCGAT
EST: gi|169077707|gb|FE485385.1|FE485385
EST:     TGACTTAAGACATTGTTTTGTCACGTCAGCTACCTTTGAAGAATTCGGTG                         AAAATACGAACGCCGTGCCTAAAGCAGCTGGATGGGAACCTTCTGCGCGAT
genomic: TGACTTAAGACATTGTTTTGTCACGTCAGCTACCTTTGAAGAATTCGGTGgtatgttttt ... gtccttccagAAAATACGAACGCCGTGCCTAAAGCAGCTGGATGGGAACCTTCTGCGCGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttttttcttgctttcctagacaaggtaagctactaactagagtccttccagAAAATACGAACGCCGTGCCTAAAGCAGCTGGATGGGAACCTTCTGCGCGATCAGTCGATCTTTCTTCCTTAATGAATCCTGATAT
                                  tactaac  putative branch site (score: 0)
                                              tccttcc  putative PPT
     tttttctt  TA-rich tract