1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagttcttctcaaacttgagctacaaaactcatgctctattttttccagAGGGTTTTGGGCGACGGACTTTTAGTGGTGCGAAAGATCGAAAACGTCCAGACTGGTCAGAGCAACAAGCCAAAGCTCCAATGCACAATTTCGCAATGTG
species | Selaginella moellendorffii |
transcript | EFJ38013 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAACTTGCGCCAAATGCGACTGGCTCGACAACAAGCATGTGGTGTTTGGA AGGGTTTTGGGCGACGGACTTTTAGTGGTGCGAAAGATCGAAAACGTCCAGEST: gi|169052927|gb|FE460642.1|FE460642
genomic: TAACTTGCGCCAAATGCGACTGGCTCGACAACAAGCATGTGGTGTTTGGAgtaagttctt ... ttttttccagAGGGTTTTGGGCGACGGACTTTTAGTGGTGCGAAAGATCGAAAACGTCCAG
EST: TAACTTGCGCCAAATGCGACTGGCTCGACAACAAGCATGTGGTGTTTGGA AGGGTTTTGGGCGACGGACTTTTAGTGGTGCGAAAGATCGAAAACGTCCAGEST: gi|169052928|gb|FE460643.1|FE460643
genomic: TAACTTGCGCCAAATGCGACTGGCTCGACAACAAGCATGTGGTGTTTGGAgtaagttctt ... ttttttccagAGGGTTTTGGGCGACGGACTTTTAGTGGTGCGAAAGATCGAAAACGTCCAG
EST: TAACTTGCGCCAAATGCGACTGGCTCGACAACAAGCATGTGGTGTTTGGA AGGGTTTTGGGCGACGGACTTTTAGTGGTGCGAAAGATCGAAAACGTCCAG
genomic: TAACTTGCGCCAAATGCGACTGGCTCGACAACAAGCATGTGGTGTTTGGAgtaagttctt ... ttttttccagAGGGTTTTGGGCGACGGACTTTTAGTGGTGCGAAAGATCGAAAACGTCCAG
gtaagttcttctcaaacttgagctacaaaactcatgctctattttttccagAGGGTTTTGGGCGACGGACTTTTAGTGGTGCGAAAGATCGAAAACGTCCAGACTGGTCAGAGCAACAAGCCAAAGCTCCAATGCACAATTTCGCAATGTG
tgctctattttttcc CT-rich tract
tctatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcttctcaaacttgagctacaaaactcatgctctattttttccagAGGGTTTTGGGCGACGGACTTTTAGTGGTGCGAAAGATCGAAAACGTCCAGACTGGTCAGAGCAACAAGCCAAAGCTCCAATGCACAATTTCGCAATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA