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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttccgagcactccttttggtcttttcttccaatctcatcacgggttctttttctttttcttcttttcttttgttcttgcagGGTGTGCGCGTGTATGCAG

Basic information

species Selaginella moellendorffii
transcript EFJ37190
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169109931|gb|FE511079.1|FE511079
EST:     TACGAGGCTGCCAATATCCTCTACTGCATCTCGGACGGCGTCTACTGCAC                         GGTGTGCGCGTGTATGCAG
genomic: TACGAGGCTGCCAATATCCTCTACTGCATCTCGGACGGCGTCTACTGCACgtaagttctt ... gttcttgcagGGTGTGCGCGTGTATGCAG
EST: gi|169109930|gb|FE511078.1|FE511078
EST:     TACGAGGCTGCCAATATCCTCTACTGCATCTCGGACGGCGTCTACTGCAC                         GGTGTGCGCGTGTATGCAG
genomic: TACGAGGCTGCCAATATCCTCTACTGCATCTCGGACGGCGTCTACTGCACgtaagttctt ... gttcttgcagGGTGTGCGCGTGTATGCAG
EST: gi|169048544|gb|FE454426.1|FE454426
EST:     TACGAGGCTGCCAATATCCTCTACTGCATCTCGGACGGCGTCTACTGCAC                         GGTGTGCGCGTGTATGCAG
genomic: TACGAGGCTGCCAATATCCTCTACTGCATCTCGGACGGCGTCTACTGCACgtaagttctt ... gttcttgcagGGTGTGCGCGTGTATGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccaatctcatcacgggttctttttctttttcttcttttcttttgttcttgcagGGTGTGCGCGTGTATGCAG
           tcacgggttctttttc  CT-rich tract
                  ttctttttcttttt  TA-rich tract