1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttggcgagcatgttacatgtcgttcattgcacgcgcttctgctgcgtgtagGTGTCCGGAGGCTGGAGGCACACCGTTGCTCTAACGGAAGCGGGCAAGCTTTACGGATGGGGGTGGAACAAG
species | Selaginella moellendorffii |
transcript | EFJ35396 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCTCTTACCACACCAGGTTGCAGCCCTGGCGGAGTTCAACATCACACAG GTGTCCGGAGGCTGGAGGCACACCGTTGCTCTAACGGAAGCGGGCAAGCTTEST: gi|169116294|gb|FE517241.1|FE517241
genomic: ATCTCTTACCACACCAGGTTGCAGCCCTGGCGGAGTTCAACATCACACAGgttggcgagc ... ctgcgtgtagGTGTCCGGAGGCTGGAGGCACACCGTTGCTCTAACGGAAGCGGGCAAGCTT
EST: ATCTCTTACCACACCAGGTTGCAGCCCTGGCGGAGTTCAACATCACACAG GTGTCCGGAGGCTGGAGGCACACCGTTGCTCTAACGGAAGCGGGCAAGCTTEST: gi|169057944|gb|FE465542.1|FE465542
genomic: ATCTCTTACCACACCAGGTTGCAGCCCTGGCGGAGTTCAACATCACACAGgttggcgagc ... ctgcgtgtagGTGTCCGGAGGCTGGAGGCACACCGTTGCTCTAACGGAAGCGGGCAAGCTT
EST: ATCTCTTACCACACCAGGTTGCAGCCCTGGCGGAGTTCAACATCACACAG GTGTCCGGAGGCTGGAGGCACACCGTTGCTCTAACGGAAGCGGGCAAGCTTEST: gi|169113756|gb|FE514823.1|FE514823
genomic: ATCTCTTACCACACCAGGTTGCAGCCCTGGCGGAGTTCAACATCACACAGgttggcgagc ... ctgcgtgtagGTGTCCGGAGGCTGGAGGCACACCGTTGCTCTAACGGAAGCGGGCAAGCTT
EST: ATCTCTTACCACACCAGGTTGCAGCCCTGGCGGAGTTCAACATCACACAG GTGTCCGGAGGCTGGAGGCACACCGTTGCTCTAACGGAAGCGGGCAAGCTTEST: gi|169079226|gb|FE490115.1|FE490115
genomic: ATCTCTTACCACACCAGGTTGCAGCCCTGGCGGAGTTCAACATCACACAGgttggcgagc ... ctgcgtgtagGTGTCCGGAGGCTGGAGGCACACCGTTGCTCTAACGGAAGCGGGCAAGCTT
EST: ATCTCTTACCACACCAGGTTGCAGCCCTGGCGGAGTTCAACATCACACAG GTGTCCGGAGGCTGGAGGCACACCGTTGCTCTAACGGAAGCGGGCAAGCTTEST: gi|169034808|gb|FE443997.1|FE443997
genomic: ATCTCTTACCACACCAGGTTGCAGCCCTGGCGGAGTTCAACATCACACAGgttggcgagc ... ctgcgtgtagGTGTCCGGAGGCTGGAGGCACACCGTTGCTCTAACGGAAGCGGGCAAGCTT
EST: ATCTCTTACCACACCAGGTTGCAGCCCTGGCGGAGTTCAACATCACACAG GTGTCCGGAGGCTGGAGGCACACCGTTGCTCTAACGGAAGCGGGCAAGCTT
genomic: ATCTCTTACCACACCAGGTTGCAGCCCTGGCGGAGTTCAACATCACACAGgttggcgagc ... ctgcgtgtagGTGTCCGGAGGCTGGAGGCACACCGTTGCTCTAACGGAAGCGGGCAAGCTT
gttggcgagcatgttacatgtcgttcattgcacgcgcttctgctgcgtgtagGTGTCCGGAGGCTGGAGGCACACCGTTGCTCTAACGGAAGCGGGCAAGCTTTACGGATGGGGGTGGAACAAG
cttctgct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggcgagcatgttacatgtcgttcattgcacgcgcttctgctgcgtgtagGTGTCCGGAGGCTGGAGGCACACCGTTGCTCTAACGGAAGCGGGCAAGCTTTACGGATGGGGGTGGAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA