1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgaagcgttactccttgttcttcttctcttgctcaagttttgttgcatcattttcagGAACAACAAAAGTCCCAAACTTCGATGAGAACCTTGGCTCTTTAAATCTCAAACTCTCCAAGGCGGAGATTGATGAGATCGCTGCTGCTGTCCCCGAAGA
species | Selaginella moellendorffii |
transcript | EFJ35213 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCACTGGCGTGGGTTTTAGCGCAAGGCAAGGACGTTGTTCCCATCCCAG GAACAACAAAAGTCCCAAACTTCGATGAGAACCTTGGCTCTTTAAATCTCAEST: gi|169080468|gb|FE488445.1|FE488445
genomic: AGCACTGGCGTGGGTTTTAGCGCAAGGCAAGGACGTTGTTCCCATCCCAGgtgaagcgtt ... tcattttcagGAACAACAAAAGTCCCAAACTTCGATGAGAACCTTGGCTCTTTAAATCTCA
EST: AGCACTGGCGTGGGTTTTAGCGCAAGGCAAGGACGTTGTTCCCATCCCAG GAACAACAAAAGTCCCAAACTTCGATGAGAACCTTGGCTCTTTAAATCTCAEST: gi|169045182|gb|FE451415.1|FE451415
genomic: AGCACTGGCGTGGGTTTTAGCGCAAGGCAAGGACGTTGTTCCCATCCCAGgtgaagcgtt ... tcattttcagGAACAACAAAAGTCCCAAACTTCGATGAGAACCTTGGCTCTTTAAATCTCA
EST: AGCACTGGCGTGGGTTTTAGCGCAAGGCAAGGACGTTGTTCCCATCCCAG GAACAACAAAAGTCCCAAACTTCGATGAGAACCTTGGCTCTTTAAATCTCAEST: gi|169047167|gb|FE457248.1|FE457248
genomic: AGCACTGGCGTGGGTTTTAGCGCAAGGCAAGGACGTTGTTCCCATCCCAGgtgaagcgtt ... tcattttcagGAACAACAAAAGTCCCAAACTTCGATGAGAACCTTGGCTCTTTAAATCTCA
EST: AGCACTGGCGTGGGTTTTAGCGCAAGGCAAGGACGTTGTTCCCATCCCAG GAACAACAAAAGTCCCAAACTTCGATGAGAACCTTGGCTCTTTAAATCTCA
genomic: AGCACTGGCGTGGGTTTTAGCGCAAGGCAAGGACGTTGTTCCCATCCCAGgtgaagcgtt ... tcattttcagGAACAACAAAAGTCCCAAACTTCGATGAGAACCTTGGCTCTTTAAATCTCA
aagcgttactccttgttcttcttctcttgctcaagttttgttgcatcattttcagGAACAACAAAAGTCCCAAACTTCGATGAGAACCTTGGCTCTTTAAATCTCAAACTCTCCAAGGCGGAGATTGATGAGATCGCTGCTGCTGTCCCCGAAGA
tcattttc CT-rich tract
atcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagcgttactccttgttcttcttctcttgctcaagttttgttgcatcattttcagGAACAACAAAAGTCCCAAACTTCGATGAGAACCTTGGCTCTTTAAATCTCAAACTCTCCAAGGCGGAGATTGATGAGATCGCTGCTGCTGTCCCCGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA