1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtatgtttctgtggtcactgtttttgccactgacttattctcctcgttgagcgcatgcagGGAACAGTTGTGATCGGAAGGAGTTCCGTCGACGAATCCACAGTTACGGGCGAACCTATGCTAATGACTAAAACAGTCGGAGACACCGTCTCGGCTGGAA
species | Selaginella moellendorffii |
transcript | EFJ35201 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGCAGGAGATCGAGTGCTTGTATTACCAGGAGAAGTGATTCCTATTGAT GGAACAGTTGTGATCGGAAGGAGTTCCGTCGACGAATCCACAGTTACGGGCEST: gi|169029999|gb|FE439178.1|FE439178
genomic: GTGCAGGAGATCGAGTGCTTGTATTACCAGGAGAAGTGATTCCTATTGATgtatgtttct ... gcgcatgcagGGAACAGTTGTGATCGGAAGGAGTTCCGTCGACGAATCCACAGTTACGGGC
EST: GTGCAGGAGATCGAGTGCTTGTATTACCAGGAGAAGTGATTCCTATTGAT GGAACAGTTGTGATCGGAAGGAGTTCCGTCGACGAATCCACAGTTACGGGCEST: gi|169105467|gb|FE506439.1|FE506439
genomic: GTGCAGGAGATCGAGTGCTTGTATTACCAGGAGAAGTGATTCCTATTGATgtatgtttct ... gcgcatgcagGGAACAGTTGTGATCGGAAGGAGTTCCGTCGACGAATCCACAGTTACGGGC
EST: GAGATCGAGTGCTTGTATTACCAGGAGAAGTGATTCCTATTGAT GGAACAGTTGTGATCGGAAGGAGTTCCGTCGACGAATCCACAGTTACGGGCEST: gi|169024040|gb|FE435148.1|FE435148
genomic: GAGATCGAGTGCTTGTATTACCAGGAGAAGTGATTCCTATTGATgtatgtttct ... gcgcatgcagGGAACAGTTGTGATCGGAAGGAGTTCCGTCGACGAATCCACAGTTACGGGC
EST: GTGCAGGAGATCGAGTGCTTGTATTACCAGGAGAAGTGATTCCTATTGAT GGAACAGTTGTGATCGGAAGGAGTTCCGTCGACGAATCCACAGTTACGGGC
genomic: GTGCAGGAGATCGAGTGCTTGTATTACCAGGAGAAGTGATTCCTATTGATgtatgtttct ... gcgcatgcagGGAACAGTTGTGATCGGAAGGAGTTCCGTCGACGAATCCACAGTTACGGGC
tttctgtggtcactgtttttgccactgacttattctcctcgttgagcgcatgcagGGAACAGTTGTGATCGGAAGGAGTTCCGTCGACGAATCCACAGTTACGGGCGAACCTATGCTAATGACTAAAACAGTCGGAGACACCGTCTCGGCTGGAA
cactgac putative branch site (score: 9)
tgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttctgtggtcactgtttttgccactgacttattctcctcgttgagcgcatgcagGGAACAGTTGTGATCGGAAGGAGTTCCGTCGACGAATCCACAGTTACGGGCGAACCTATGCTAATGACTAAAACAGTCGGAGACACCGTCTCGGCTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA