1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgttacaagccaaaagcagtcatcttacagttgttgttttgacagGGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACAGGGCTCGTCAGCGAGGAGTGTAAGATGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAAC
species | Selaginella moellendorffii |
transcript | EFJ34432 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACG AGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACGGGGCTCGTCAGCEST: gi|169039488|gb|FE449163.1|FE449163
genomic: GATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACGgtatgttaca ... gttttgacagGGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACAGGGCTCGTCAGC
EST: GATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACG AGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACGGGGCTCGTCAGCEST: gi|169030852|gb|FE439797.1|FE439797
genomic: GATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACGgtatgttaca ... gttttgacagGGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACAGGGCTCGTCAGC
EST: GATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACG GGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACAGGGCTCGTCAGCEST: gi|169043989|gb|FE451575.1|FE451575
genomic: GATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACGgtatgttaca ... gttttgacagGGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACAGGGCTCGTCAGC
EST: GATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACG AGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACGGGGCTCGTCAGCEST: gi|169043990|gb|FE451576.1|FE451576
genomic: GATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACGgtatgttaca ... gttttgacagGGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACAGGGCTCGTCAGC
EST: GATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACG AGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACGGGGCTCGTCAGCEST: gi|169072916|gb|FE482344.1|FE482344
genomic: GATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACGgtatgttaca ... gttttgacagGGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACAGGGCTCGTCAGC
EST: GATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACG AGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACGGGGCTCGTCAGCEST: gi|169043410|gb|FE451854.1|FE451854
genomic: GATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACGgtatgttaca ... gttttgacagGGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACAGGGCTCGTCAGC
EST: GATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACG GGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACAGGGCTCGTCAGTEST: gi|169108565|gb|FE510780.1|FE510780
genomic: GATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACGgtatgttaca ... gttttgacagGGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACAGGGCTCGTCAGC
EST: GATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACG GGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACAGGGCTCGTCAGT
genomic: GATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACGgtatgttaca ... gttttgacagGGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACAGGGCTCGTCAGC
gtatgttacaagccaaaagcagtcatcttacagttgttgttttgacagGGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACAGGGCTCGTCAGCGAGGAGTGTAAGATGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAAC
atcttac putative branch site (score: 88)
ttgtttt putative PPT
tatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttacaagccaaaagcagtcatcttacagttgttgttttgacagGGTATTGTGGCTCAAATCAACCAAGCTATCGGGGCTACAGGGCTCGTCAGCGAGGAGTGTAAGATGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG