1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagaacagtttcaagagattgtttcttcttcttctttttgcttgatggctgtattgcagGCATAGCTACTTCGTGAAGATGGTTCAAGCATTTGAAGAAGTTGCAGCCAGTTCAGCGCTAGTCCCGCAGAAGTTTTGCTGCCGGAACGATTCGTTCGAG
species | Selaginella moellendorffii |
transcript | EFJ33956 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACTTTTTAGGCACTGCGTTTCATCCGGAGCTAACATCGGATACTCGATG GCATAGCTACTTCGTGAAGATGGTTCAAGCATTTGAAGAAGTTGCAGCCAGEST: gi|169024035|gb|FE435143.1|FE435143
genomic: AACTTTTTAGGCACTGCGTTTCATCCGGAGCTAACATCGGATACTCGATGgtaagaacag ... tgtattgcagGCATAGCTACTTCGTGAAGATGGTTCAAGCATTTGAAGAAGTTGCAGCCAG
EST: AACTTTTTAGGCACTGCGTTTCATCCGGAGCTAACATCGGATACTCGATG GCATAGCTACTTCGTGAAGATGGTTCAAGCATTTGAAGAAGTTGCAGCCAGEST: gi|169024036|gb|FE435144.1|FE435144
genomic: AACTTTTTAGGCACTGCGTTTCATCCGGAGCTAACATCGGATACTCGATGgtaagaacag ... tgtattgcagGCATAGCTACTTCGTGAAGATGGTTCAAGCATTTGAAGAAGTTGCAGCCAG
EST: AACTTTTTAGGCACTGCGTTTCATCCGGAGCTAACATCGGATACTCGATG GCATAGCTACTTCGTGAAGATGGTTCAAGCATTTGAAGAAGTTGCAGCCAGEST: gi|169063023|gb|FE471129.1|FE471129
genomic: AACTTTTTAGGCACTGCGTTTCATCCGGAGCTAACATCGGATACTCGATGgtaagaacag ... tgtattgcagGCATAGCTACTTCGTGAAGATGGTTCAAGCATTTGAAGAAGTTGCAGCCAG
EST: AACTTTTTAGGCACTGCGTTTCATCCGGAGCTAACATCGGATACTCGATG GCATAGCTACTTCGTGAAGATGGTTCAAGCATTTGAAGAAGTTGCAGCCAGEST: gi|169065635|gb|FE474849.1|FE474849
genomic: AACTTTTTAGGCACTGCGTTTCATCCGGAGCTAACATCGGATACTCGATGgtaagaacag ... tgtattgcagGCATAGCTACTTCGTGAAGATGGTTCAAGCATTTGAAGAAGTTGCAGCCAG
EST: AACTTTTTAGGCACTGCGTTTCATCCGGAGCTAACATCGGATACTCGATG GCATAGCTACTTCGTGAAGATGGTTCAAGCATTTGAAGAAGTTGCAGCCAG
genomic: AACTTTTTAGGCACTGCGTTTCATCCGGAGCTAACATCGGATACTCGATGgtaagaacag ... tgtattgcagGCATAGCTACTTCGTGAAGATGGTTCAAGCATTTGAAGAAGTTGCAGCCAG
acagtttcaagagattgtttcttcttcttctttttgcttgatggctgtattgcagGCATAGCTACTTCGTGAAGATGGTTCAAGCATTTGAAGAAGTTGCAGCCAGTTCAGCGCTAGTCCCGCAGAAGTTTTGCTGCCGGAACGATTCGTTCGAG
gcttgat putative branch site (score: 13)
ttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacagtttcaagagattgtttcttcttcttctttttgcttgatggctgtattgcagGCATAGCTACTTCGTGAAGATGGTTCAAGCATTTGAAGAAGTTGCAGCCAGTTCAGCGCTAGTCCCGCAGAAGTTTTGCTGCCGGAACGATTCGTTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC