Sequence
atgc intronic sequence ATGC exonic sequencegttgtcttttagagttctatacattcatgaaaccgtgacgctattacagGAACGCCACTGTACATGGCTCCCGAGCTTGTTCGTGAGCAGCCTTACAACCATACGGCAGATTTATGGTCTCTTGGTGTGATATT
Basic information
species | Selaginella moellendorffii |
transcript | EFJ33693 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ33693 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: GLYMA10G22860.1 (Glycine max), 3'ss of exon 6
-------------------------------------------------------------------------gttgtcttttagagt-tctatacattcatgaaaccgtgacgctattacagGAACGCCACTGTACATGGCTCCCGAGCTTGTTCGTGAGCAGCCTTACAACCATACGGCAGATTTATGGTCTCTTGGTGTGATATT
| | | || || ||| | ||| ||| ||| | || | | | |||||||||| || ||||||||||||| |||||||| || || || || |||||||| || | ||||||||||||||||||||| |||||
gtttggcttatcagaattgattttgttgcttttggaatctaaactgtagcaatgtagctgcttgtactttgaggatttgttctacagtctgcatatattt-tgacatggt-atgtt-ttacagGAACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATATT
upper sequence: EFJ33693 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: GLYMA20G16860.1 (Glycine max), 3'ss of exon 6
-------------------------------------------------------------------------gttgtcttttagagttctatacattcatgaaaccgtgacgctattacagGAACGCCACTGTACATGGCTCCCGAGCTTGTTCGTGAGCAGCCTTACAACCATACGGCAGATTTATGGTCTCTTGGTGTGATATT
| | | || || ||| || | || | | | | | | ||||||| || || ||||||||||||| |||||||| || || || || |||||||| || | ||||||||||||||||||||| ||| |
gtttggcttatcaaaattgattttgttgcttttggaatcttaactgtagcaatgtagctgcttgtactttgaggatttgttctacagt-ctgcatatactttgacatagtatgtt-ttacagGCACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATACT
upper sequence: EFJ33693 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: PP1S53_93V6.1 (Physcomitrella patens), 3'ss of exon 6
--------------------------------------------------------------------------------------------------------------------gttgtcttttagagttctatacattcatgaaaccgtgacgctattacagGAACGCCACTGTACATGGCTCCCGAGCTTGTTCGTGAGCAGCCTTACAACCATACGGCAGATTTATGGTCTCTTGGTGTGATATT
||| || || || ||| | | | | ||| ||||| |||||||||||||| ||||| ||||| ||||| ||||||||||| || || ||| | ||||| |||||||| || |
gtacacacacgctcacacacatatttacgtacatatagaatcatgtcttcttctcatggtttcctactgctgaacacttcatctgtatcacttcaactctatcacttaggacttcggtttactcagcttactcagcttgttattgatatgatt-tacgcacatagGGACGCCGCTGTACATGGCTCCTGAGCTAGTTCGAGAGCAACCTTACAACCACACAGCTGATCTTTGGTCCCTTGGTGTCATTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgtcttttagagttctatacattcatgaaaccgtgacgctattacagGAACGCCACTGTACATGGCTCCCGAGCTTGTTCGTGAGCAGCCTTACAACCATACGGCAGATTTATGGTCTCTTGGTGTGATATT
tatacatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgtcttttagagttctatacattcatgaaaccgtgacgctattacagGAACGCCACTGTACATGGCTCCCGAGCTTGTTCGTGAGCAGCCTTACAACCATACGGCAGATTTATGGTCTCTTGGTGTGATATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT