1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtagaagagaaatttttagactcccaaagtgacttgctcacaatattatcttttggacggtgtgtgactagGGAGGAGCCAAGAAGGTCGTTATTTCAGCACCCTCGGAAGACGCGCCAATGTTCGTTGTTGGTGTGAATCACGAGAAATACAAAGCCGAGCAAGACATTG
species | Selaginella moellendorffii |
transcript | EFJ32914 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGCCTCTGGCGTCTTTACCAAGACCGAAAAGGCGTCTGCGCACTTAAAG GGAGGAGCCAAGAAGGTCGTTATTTCAGCACCCTCGGAAGACGCGCCAATGEST: gi|70669490|gb|DN838067.1|DN838067
genomic: AGGCCTCTGGCGTCTTTACCAAGACCGAAAAGGCGTCTGCGCACTTAAAGgtagaagaga ... gtgtgactagGGAGGAGCCAAGAAGGTCGTTATTTCAGCACCCTCGGAAGACGCGCCAATG
EST: AGGCCTCTGGCGTCTTTACCAAGACCGAANAGGCGTCTGCGCACTTAAAG GGAGGAGCCAAGAAGGTCGTTATTTCAGCACCCTCGGAAGACGCGCCAATGEST: gi|169019704|gb|FE428014.1|FE428014
genomic: AGGCCTCTGGCGTCTTTACCAAGACCGAAAAGGCGTCTGCGCACTTAAAGgtagaagaga ... gtgtgactagGGAGGAGCCAAGAAGGTCGTTATTTCAGCACCCTCGGAAGACGCGCCAATG
EST: AGGCCTCTGGCGTCTTTACCAAGACCGAAAAGGCGTCTGCGCACTTAAAG GGAGGAGCCAAGAAGGTCGTTATTTCAGCACCCTCGAAAGACGCACCAATGEST: gi|169109434|gb|FE509543.1|FE509543
genomic: AGGCCTCTGGCGTCTTTACCAAGACCGAAAAGGCGTCTGCGCACTTAAAGgtagaagaga ... gtgtgactagGGAGGAGCCAAGAAGGTCGTTATTTCAGCACCCTCGGAAGACGCGCCAATG
EST: AGGCCTCTGGCGTCTTTACCAAGACCGAAAAGGCGTCTGCGCACTTAAAG GGAGGAGCCAAGAAGGTCGTTATTTCAGCACCCTCGGAAGACGCGCCAATG
genomic: AGGCCTCTGGCGTCTTTACCAAGACCGAAAAGGCGTCTGCGCACTTAAAGgtagaagaga ... gtgtgactagGGAGGAGCCAAGAAGGTCGTTATTTCAGCACCCTCGGAAGACGCGCCAATG
tagactcccaaagtgacttgctcacaatattatcttttggacggtgtgtgactagGGAGGAGCCAAGAAGGTCGTTATTTCAGCACCCTCGGAAGACGCGCCAATGTTCGTTGTTGGTGTGAATCACGAGAAATACAAAGCCGAGCAAGACATTG
tgctcac putative branch site (score: 46)
acaatattatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaagagaaatttttagactcccaaagtgacttgctcacaatattatcttttggacggtgtgtgactagGGAGGAGCCAAGAAGGTCGTTATTTCAGCACCCTCGGAAGACGCGCCAATGTTCGTTGTTGGTGTGAATCACGAGAAATACAAAGCCGAGCAAGACATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA