1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagcaacctactacatcctgacagctaacggacatgtctttgtaacagATAGAAGCCATGAAAGATACGCTCAAGAGCTTTTACGGAGAGAATCCTAGGGAGTCGATGGACATTTCGCGGGTGGTTAATATTAACCATTTCAATCGCC
species | Selaginella moellendorffii |
transcript | EFJ32666 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCGTCAGCCCAGACTATGTGCTTGTCGACTCGTCTTGCTCGACTAAATTC ATAGAAGCCATGAAAGATACGCTCAAGAGCTTTTACGGAGAGEST: gi|169020659|gb|FE428825.1|FE428825
genomic: GCGTCAGCCCAGACTATGTGCTTGTCGACTCGTCTTGCTCGACTAAATTCgtaagcaacc ... tttgtaacagATAGAAGCCATGAAAGATACGCTCAAGAGCTTTTACGGAGAG
EST: GCGTCAGCCCAGACTATGTGCTTGTCGACTCGTCTTGCTCGACTAAAT-C ATAGAAGCCATGAAAGEST: gi|169040462|gb|FE450321.1|FE450321
genomic: GCGTCAGCCCAGACTATGTGCTTGTCGACTCGTCTTGCTCGACTAAATTCgtaagcaacc ... tttgtaacagATAGAAGCCATGAAAG
EST: GCGTCAGCCCAGACTATGTGCTTGTCGACTCGTCTTGCTCGACTAAATTC ATAGAAGCCATGAAAGATACGCTCAAGAGCTT
genomic: GCGTCAGCCCAGACTATGTGCTTGTCGACTCGTCTTGCTCGACTAAATTCgtaagcaacc ... tttgtaacagATAGAAGCCATGAAAGATACGCTCAAGAGCTT
gtaagcaacctactacatcctgacagctaacggacatgtctttgtaacagATAGAAGCCATGAAAGATACGCTCAAGAGCTTTTACGGAGAGAATCCTAGGGAGTCGATGGACATTTCGCGGGTGGTTAATATTAACCATTTCAATCGCC
agctaac putative branch site (score: 30)
tgtcttt putative PPT
tttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaacctactacatcctgacagctaacggacatgtctttgtaacagATAGAAGCCATGAAAGATACGCTCAAGAGCTTTTACGGAGAGAATCCTAGGGAGTCGATGGACATTTCGCGGGTGGTTAATATTAACCATTTCAATCGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA