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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttgtgtttagtttctatttatcttcattgcttctagctatttctatcgactgagtttgctacagATTTGTGGAGATCATGGCTCCAGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAAATGACTTGGTGCATGGCTGGGGACTAGACTTT

Basic information

species Selaginella moellendorffii
transcript EFJ32148
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ32148 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: GLYMA05G30850.1 (Glycine max), 3'ss of exon 8
------------------------gtaagttttgtgtttagtttctatttatcttcattgcttct-agctatttctatcgactgagtttgctacagATTTGTGGAGATCATGGCTCCAGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAAATGACTTGGTGCATGGCTGGGGACTAGACTTT
                         |   ||||  |    | | | || | |   |||   |  | ||||  ||| | | | |  ||    | ||| ||||| ||||| ||||||||||| ||||| || || || ||||||||||||||||||||||||||                                  
gtaagtaactgttaaagaatttttatttttttttggcaggggtacaatattttcccatctttaatgagctgattccacc-attctgtaacatgcagGTTTGTTGAGATAATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAG---------------------------------

upper sequence: EFJ32148 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: GLYMA08G14050.1 (Glycine max), 3'ss of exon 8
-------------gtaagttttgtgttta----gtttctatttatcttcattgctt-ctagctatttctatcgactgagtttgctacagATTTGTGGAGATCATGGCTCCAGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAAATGACTTGGTGCATGGCTGGGGACTAGACTTT
               |  |||| | ||      ||| | || | |   |||   |   |||||  ||| | | | |  ||    | ||| ||||| ||||| ||||||||||| ||||| || || || ||||||||||||||||||||||||||                                  
gtaagtaactgttacagatttttttttgggggggttacaatattttcccatctttagttagctgattccacc-attctgtaacatgcagGTTTGTTGAGATTATGGCTCCAGTGTTTTCACGAAATGCATGGCGCTGTGTGTGGCATATGATTCAG---------------------------------

upper sequence: EFJ32148 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: GLYMA11G37770.1 (Glycine max), 3'ss of exon 10
-------gtaagttttgtgttta--gtttctatttatcttc------attgcttctagctatttctat-cgactgagtttgctacagATTTGTGGAGATCATGGCTCCAGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAAATGACTTGGTGCATGGCTGGGGACTAGACTTT
       |    || ||| ||||   || |  | |||  ||      | ||| |||   | |       |   | |      | ||| ||||| ||||| ||||||||||| || |||||  | || ||||||||||||||||||||||||||                                  
gtaagtagctgcttatgtatttatcattacattatatagtctacaagactgcatctcattgtgctagcactgttaatacaaatgcagGTTTGTTGAGATTATGGCTCCAGTGTTCTCGCGAGATGCATGGCGCTGTGTGTGGCATATGATTCAG---------------------------------

upper sequence: EFJ32148 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: GLYMA08G14040.1 (Glycine max), 3'ss of exon 10
gtaagttttgtgtttagt-ttctatttatcttcattgcttctagctatttctatc-gactgagtt-tgc-tacagATTTGTGGAGATCATGGCTCCAGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAAATGACTTGGTGCATGGCTGGGGACTAGACTTT
|||||  |    |  ||  || | ||| | ||     |   || | |  | ||||  | |  ||| ||| | ||||||||| ||||| ||||||||||| ||||| ||  | || ||||| ||||| ||||||||||||||                                  
gtaagcatcagttgaagcattatttttgtattatccacccataccaaactgtatccaattatgttatgcatgcagATTTGTTGAGATTATGGCTCCAGTGTTTTCACGAGATGCATGGCGTTGTGTCTGGCATATGATTCAG---------------------------------

upper sequence: EFJ32148 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: GLYMA05G30830.1 (Glycine max), 3'ss of exon 10
gtaagttttgtgtttagt-ttctatttatcttcattgcttctagctatttctatcgactgagtttgc---tacagATTTGTGGAGATCATGGCTCCAGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAAATGACTTGGTGCATGGCTGGGGACTAGACTTT
|||||  |    |  ||  || | ||| ||||   | |   || | |  | |||| | | |  ||     | ||||||||| ||||| ||||||||||| ||||| ||  | || ||||  ||||||||||||||||||||                                  
gtaagcatcagttgaagcattatttttgtcttatctacccataccaaactgtatccaattatgttatgtatgcagATTTGTTGAGATTATGGCTCCAGTGTTTTCACGAGATGCATGGCATTGTGTGTGGCATATGATTCAG---------------------------------

upper sequence: EFJ32148 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: GLYMA18G01710.1 (Glycine max), 3'ss of exon 10
----------------gtaagttttgtgtttagtttctatttatcttcattgcttctagctatttctatcgac-tgagtttgctacagATTTGTGGAGATCATGGCTCCAGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAAATGACTTGGTGCATGGCTGGGGACTAGACTTT
                |||  | |  | |  | | |||| ||  |   | ||| |||   | |  |||||    | |  |   | ||| ||||| ||||| ||||||||||| || ||  |  | || ||||||||||||||||||||||||||                                  
gtaagtagctgctgatgtatttatcatttacattatctagtttacaggactgcatctcattgtg-ctatcactgttatataaatgcagGTTTGTTGAGATTATGGCTCCAGTGTTCTCAAGAGATGCATGGCGCTGTGTGTGGCATATGATTCAG---------------------------------

upper sequence: EFJ32148 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: AT3G27470.1 (Arabidopsis thaliana), 3'ss of exon 10
---------------------------------------------gtaagttttgtgtttagtttctatttatcttcattgcttctagctatttctatcgactgagtttgctacagATTTGTGGAGATCATGGCTCCAGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAAATGACTTGGTGCATGGCTGGGGACTAGACTTT
                                               | | ||||  |  |   |  ||  |  |||||   ||   | |  || |        |        ||| ||||||||||| |||||||| ||||| || |||||||| ||||||||||||||||||||||||||                                  
gtatgcttctttacttatctatatcaatagaaatgaacttagcaaaaaggatttgcatagaaagttaat--agtttcatcatttt--gttgattttgctactacaaccaaaatcagGTTTGTGGAGATTATGGCTCCTGTTTTCTCCCGCAAGGCATGGCGCTGTGTGTGGCATATGATTCAG---------------------------------

upper sequence: EFJ32148 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: AT3G26440.4 (Arabidopsis thaliana), 3'ss of exon 10
--gtaagttttgtgt-ttagtttctattta-----tcttcattgcttctag--ctatttctatcgactgagtttgcta-cagATTTGTGGAGATCATGGCTCCAGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAAATGACTTGGTGCATGGCTGGGGACTAGACTTT
   |   | |  | | | |    | ||  |     | |||||    ||| |  | |||    |   |   |||   || ||| ||| | ||||| |||||||||||||| ||  |  |||| ||||| |||||||||||||||||||| ||||||||||| || || ||||| || ||||||
gtatggatctcatttgtcaaaaccaatacaataagtattcatactctcttgatccattaagttttgcacggttccttatcagGTTTATAGAGATTATGGCTCCAGTTTTCTCTAGAGAGGCATGGCGTTGTGTGTGGCATATGATTCAGAATGACTTGGTTCACGGTTGGGGTCTTGACTTT

upper sequence: EFJ32148 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: Vv14s0066g00310.t01 (Vitis vinifera), 3'ss of exon 8
----------------------------gtaagttttgt--gtttagtttctatttatct---tcattgcttctagcta-tttctatcgactg--agtttgcta--cagATTTGTGGAGATCATGGCTCCAGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAAATGACTTGGTGCATGGCTGGGGACTAGACTTT
                            | |  |||||    |||    | ||   | ||   | || | ||| |   | | | ||| || |   | ||   ||  ||| ||||| |||||||||||| | || ||||| || || || ||||| ||||| ||||||||||||||                                  
gtatgtgcacagatttaatttaagtacagaacattttgaaaatttgtactgtaaggaactgttttatggattcaaataaatctttattgattattacttaaatatgcagCTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAG---------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169047026|gb|FE455911.1|FE455911
EST:     GAGAAGCCAGGTTGGTGTAGTGCAGGGCCTCACAAGCCTCCTTGTGCCGC                         ATTTGTGGAGATCATGGCTCCAGTTTTTTCGCGCAAGGCCTGGCGCTGTGT
genomic: GAGAAGCCAGGTTGGTGTAGTGCAGGGCCTCACAAGCCTCCTTGTGCTGCgtaagttttg ... tttgctacagATTTGTGGAGATCATGGCTCCAGTTTTTTCGCGCAAGGCCTGGCGCTGTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttctatttatcttcattgcttctagctatttctatcgactgagtttgctacagATTTGTGGAGATCATGGCTCCAGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAAATGACTTGGTGCATGGCTGGGGACTAGACTTT
     tatttatcttcatt  TA-rich tract