1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacgtgaaaaatccatctctaaatctctacgtggctttgaacgcgtgaggttcctttgcgcagTCCCAGAACAAGTTACCAGAAGAGCTCAAGCAGCGCATTATTACCAGTGCCTGATCGTGGAGTGTTCTTTTCGAGTTTCGATTAACTTGTCCTCGACACT
species | Selaginella moellendorffii |
transcript | EFJ31704 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCATGACCCAACTTGGATGTGCTCCCATACTCTACATGCGCCATTTCCAG TCCCAGAACAAGTTACCAGAAGAGCTCAAGCAGCGCATTATTACCAGTGCCEST: gi|169076230|gb|FE485260.1|FE485260
genomic: CCATGACCCAACTTGGATGTGCTCCCATACTCTACATGCGCCATTTCCAGgtacgtgaaa ... ctttgcgcagTCCCAGAACAAGTTACCAGAAGAGCTCAAGCAGCGCATTATTACCAGTGCC
EST: CCATGACCCAACTTGGATGTGCTCCCATACTCTACATGCGCCATTTCCAG TCCCAGAACAAGTTACCAGAAGAGCTCAAGCAGCGCATTATTACCAGTGCCEST: gi|169040269|gb|FE448360.1|FE448360
genomic: CCATGACCCAACTTGGATGTGCTCCCATACTCTACATGCGCCATTTCCAGgtacgtgaaa ... ctttgcgcagTCCCAGAACAAGTTACCAGAAGAGCTCAAGCAGCGCATTATTACCAGTGCC
EST: CCATGACCCAACTTGGATGTGCTCCCATACTCTACATGCGCCATTTCCAG TCCCAGAACAAGTTACCAGAAGAGCTCAAGCAGCGCATTATTACCAGTGCC
genomic: CCATGACCCAACTTGGATGTGCTCCCATACTCTACATGCGCCATTTCCAGgtacgtgaaa ... ctttgcgcagTCCCAGAACAAGTTACCAGAAGAGCTCAAGCAGCGCATTATTACCAGTGCC
aaatccatctctaaatctctacgtggctttgaacgcgtgaggttcctttgcgcagTCCCAGAACAAGTTACCAGAAGAGCTCAAGCAGCGCATTATTACCAGTGCCTGATCGTGGAGTGTTCTTTTCGAGTTTCGATTAACTTGTCCTCGACACT
ctctaaa putative branch site (score: 7)
ttcctttgc putative PPT
tctaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgaaaaatccatctctaaatctctacgtggctttgaacgcgtgaggttcctttgcgcagTCCCAGAACAAGTTACCAGAAGAGCTCAAGCAGCGCATTATTACCAGTGCCTGATCGTGGAGTGTTCTTTTCGAGTTTCGATTAACTTGTCCTCGACACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG