1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgataccatgacaagtttctgtttcatgtcttcaacaatgccttttctggttccagTCACTTTCAGCCGTCTAGAACCAGAAGGAAAACTTATAATGGGATATAGGAAGGCACAG
species | Selaginella moellendorffii |
transcript | EFJ30938 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGTGTTACACCATGTATACAGGCTATGCATCTCCAAGCCGGTGACACAG TCACTTTCAGCCGTCTAGAACCAGAAGGAAAACTTATAATGGGATATAGGAEST: gi|169087099|gb|FE493085.1|FE493085
genomic: AGGTGTTACACCATGTATACAGGCTATGCATCTCCAAGCCGGTGACACAGgtatgatacc ... ctggttccagTCACTTTCAGCCGTCTAGAACCAGAAGGAAAACTTATAATGGGATATAGGA
EST: AGGTGTTACACCATGTATACAGGCTATGCATCTCCAAGCCGGTGACACAG TCACTTTCAGCCGTCTAGAACCAGAAGGAAAACTTATAATGGGATATAGGA
genomic: AGGTGTTACACCATGTATACAGGCTATGCATCTCCAAGCCGGTGACACAGgtatgatacc ... ctggttccagTCACTTTCAGCCGTCTAGAACCAGAAGGAAAACTTATAATGGGATATAGGA
gataccatgacaagtttctgtttcatgtcttcaacaatgccttttctggttccagTCACTTTCAGCCGTCTAGAACCAGAAGGAAAACTTATAATGGGATATAGGAAGGCACAG
ccttttctggttcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgataccatgacaagtttctgtttcatgtcttcaacaatgccttttctggttccagTCACTTTCAGCCGTCTAGAACCAGAAGGAAAACTTATAATGGGATATAGGAAGGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA