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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttagcttttctggcatcttttacttggcaaaaacattgttctatgtagGGGGAAAGTTGCAGAAGGTATTGACTTCGATCGACATTATGGTCGCCTTGTCATAATGTTTGGGGTGCCGTTTCAGTATACACTGAGCAA

Basic information

species Selaginella moellendorffii
transcript EFJ30044
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ30044 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: Vv07s0104g00060.t01 (Vitis vinifera), 3'ss of exon 7
--------------------------------------gtttgttagcttttctggcatcttttacttgg---caaaaacattgttcta------tgtagGGGGAAAGTTGCAGAAGGTATTGACTTCGATCGACATTATGGTCGCCTTGTCATAATGTTTGGGGTGCCGTTTCAGTATACACTGAGCAA
                                      |  ||   |   ||  ||   | |  |  ||     ||||   |  ||||       || ||||||||||| || ||||||||||| || ||||||||||||||  |  | || || |||||||| || || || || || ||| | |||| 
ggggaatcccctgatcccctggtatgaactgcataaagggatgggggtgattgagggtccatcaagatgagattaaaagtttatttctgcactgttgcagGGGGAAAGTAGCTGAAGGTATTGATTTTGATCGACATTATGGAAGATTAGTGATCATGTTTGGTGTTCCTTTCCAATACACATTAAGCAG

upper sequence: EFJ30044 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: PP1S145_26V6.3 (Physcomitrella patens), 3'ss of exon 9
-------------------------------------------------------------------------------gtttgttagcttttctggcatcttttacttggcaaaaacattgtt--ctatgtagGGGGAAAGTTGCAGAAGGTATTGACTTCGATCGACATTATGGTCGCCTTGTCATAATGTTTGGGGTGCCGTTTCAGTATACACTGAGCAA
                                                                               |     | | ||  ||| |  | |  |  ||||      |||||   |   | ||||| ||||||||||| |||||||| || || || || |||||||||||||| || |||| ||| || || ||||| || || || |||| 
gtaagttgtttctggatcgtccatctacagtcgtatttgagatttagaggctcaatcctcaactcgtatgagctacatggagacctcgtttcactgac--catcaatgtggctggtg-attgtcgacatggcagGGGCAAAGTTGCAGAGGGTATTGATTTTGACCGGCACTATGGTCGCCTTGTGATTATGTATGGTGTACCATTTCAATACACCCTCAGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgttagcttttctggcatcttttacttggcaaaaacattgttctatgtagGGGGAAAGTTGCAGAAGGTATTGACTTCGATCGACATTATGGTCGCCTTGTCATAATGTTTGGGGTGCCGTTTCAGTATACACTGAGCAA
                                           ttgttct  CT-rich tract
                                   aaaaacatt  TA-rich tract