1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtcgcgctagcttatcaaaacattgacatttttcttttcctttgcagCCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGGAGGTTCAGTGAAGGTACCAGTGCTGACAGAGAAATCCAAAGAACACTTATGGAAC
species | Selaginella moellendorffii |
transcript | EFJ28962 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAA CCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGAAGGTTCEST: gi|169035135|gb|FE444918.1|FE444918
genomic: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAAgtatgtcgcg ... tcctttgcagCCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGGAGGTTC
EST: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAA CCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGAAGGTTCEST: gi|169071646|gb|FE477088.1|FE477088
genomic: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAAgtatgtcgcg ... tcctttgcagCCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGGAGGTTC
EST: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAA CCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGGAGGTTCEST: gi|169071647|gb|FE477089.1|FE477089
genomic: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAAgtatgtcgcg ... tcctttgcagCCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGGAGGTTC
EST: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAA CCGTGCATCATTTTCATGGATGANATCGACGCTATAGGCGGACGGAGGTTCEST: gi|169043515|gb|FE452635.1|FE452635
genomic: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAAgtatgtcgcg ... tcctttgcagCCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGGAGGTTC
EST: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAA CCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGAAGGTTCEST: gi|169040793|gb|FE447844.1|FE447844
genomic: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAAgtatgtcgcg ... tcctttgcagCCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGGAGGTTC
EST: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAA CCGTGCATCATTTTCATGGATGAAATCGACGCTNTAGGCGGACGAAGGTTCEST: gi|169027922|gb|FE434929.1|FE434929
genomic: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAAgtatgtcgcg ... tcctttgcagCCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGGAGGTTC
EST: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAA CCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGGAGGTTCEST: gi|169043514|gb|FE452634.1|FE452634
genomic: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAAgtatgtcgcg ... tcctttgcagCCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGGAGGTTC
EST: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAA CCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGAAGGTTCEST: gi|169027923|gb|FE434930.1|FE434930
genomic: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAAgtatgtcgcg ... tcctttgcagCCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGGAGGTTC
EST: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAA CCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGGAGGTTC
genomic: AGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAAgtatgtcgcg ... tcctttgcagCCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGGAGGTTC
gtatgtcgcgctagcttatcaaaacattgacatttttcttttcctttgcagCCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGGAGGTTCAGTGAAGGTACCAGTGCTGACAGAGAAATCCAAAGAACACTTATGGAAC
cattgac putative branch site (score: 13)
ttgacatttttctttt CT-rich tract
atttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcgcgctagcttatcaaaacattgacatttttcttttcctttgcagCCGTGCATCATTTTCATGGATGAAATCGACGCTATAGGCGGACGGAGGTTCAGTGAAGGTACCAGTGCTGACAGAGAAATCCAAAGAACACTTATGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC