1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagttactctgttcctttcttctctaggagcagtctcaaaattttaatttctcttttgcgaaacagGTTTTAAAACGCCCCAGTCCTCATCAGATGATACTGATTCCAAGGTTATTCTGGTGACCAAC
species | Selaginella moellendorffii |
transcript | EFJ28903 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCTAGTGTTCCAGCTGCCACTACGTCTATGCAAACCGCACCTTTAACAA GTTTTAAAACGCCCCAGTCCTCATCAGATGATACTGATTCCAAGGTTATTCEST: gi|169072756|gb|FE484347.1|FE484347
genomic: TCCTAGTGTTCCAGCTGCCACTACGTCTATGCAAACCGCACCTTTAACAAgtaagttact ... tgcgaaacagGTTTTAAAACGCCCCAGTCCTCATCAGATGATACTGATTCCAAGGTTATTC
EST: TCCTAGTGTTCCAGCTGCCACTACGTCTATGCAAACCGCACCTTTAACAA GTTTTAAAACGCCCCAGTCCTCATCAGATGATACTGATTCCAAGGTTATTCEST: gi|169073566|gb|FE482669.1|FE482669
genomic: TCCTAGTGTTCCAGCTGCCACTACGTCTATGCAAACCGCACCTTTAACAAgtaagttact ... tgcgaaacagGTTTTAAAACGCCCCAGTCCTCATCAGATGATACTGATTCCAAGGTTATTC
EST: TCCTAGTGTTCCAGCTGCCACTACGTCTATGCAAACCGCACCTTTAACAA GTTTTAAAACGCCCCAGTCCTCATCAGATGATACTGATTCCAAGGTTATTC
genomic: TCCTAGTGTTCCAGCTGCCACTACGTCTATGCAAACCGCACCTTTAACAAgtaagttact ... tgcgaaacagGTTTTAAAACGCCCCAGTCCTCATCAGATGATACTGATTCCAAGGTTATTC
ttcctttcttctctaggagcagtctcaaaattttaatttctcttttgcgaaacagGTTTTAAAACGCCCCAGTCCTCATCAGATGATACTGATTCCAAGGTTATTCTGGTGACCAAC
ttttaat putative branch site (score: 5)
ttttaatttctctttt CT-rich tract
tcaaaattttaatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttactctgttcctttcttctctaggagcagtctcaaaattttaatttctcttttgcgaaacagGTTTTAAAACGCCCCAGTCCTCATCAGATGATACTGATTCCAAGGTTATTCTGGTGACCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG