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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttaccctcgtccttcgcttttccatttcttctgctgctaatagttacttctctctcagATAGCAGCCATGTTTAAAATCGGGAACAGCAAAGAAATCCCATCCATACCGGAGTACCTGACTAGAGAATGTAAAAACTTTTTGCGGCTCTGCTTGCAGA

Basic information

species Selaginella moellendorffii
transcript EFJ27940
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ27940 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: PP1S10_200V6.1 (Physcomitrella patens), 3'ss of exon 10
---------------------------------------------------------------------------------------------------------------------gtcagttaccctcgtccttcgcttttccatttcttctgctgctaatagttacttctctctcagATAGCAGCCATGTTTAAAATCGGGAACAGCAAAGAAATCCCATCCATACCGGAGTACCTGACTAGAGAATGTAAAAACTTTTTGCGGCTCTGCTTGCAGA
                                                                                                                      |    ||  || | | ||    |    |  |    |  |   |||  |   || | |  ||| | ||||| ||||||||||||||||||||||||||| | || |||||||| ||     || | |||||  |||||   ||| | ||  | ||||||||  
gtgagcaacccgcactctgattcctttcttttgcaaccctctatattttatgccattctctataaaaccttgcattacaatcctagagaagtattgctgggcctattcgtttttgaaatagagtaaacttgactttattgtgatgaagttgagtatta--aatgttcgattgtgtggcagGTTGCAGCAATGTTTAAAATCGGGAACAGCAAAGAATTGCCCTCCATACCAGACACATTGTCCAGAGAGGGTAAAGCGTTTGTACGTTTGTGCTTGCAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctcgtccttcgcttttccatttcttctgctgctaatagttacttctctctcagATAGCAGCCATGTTTAAAATCGGGAACAGCAAAGAAATCCCATCCATACCGGAGTACCTGACTAGAGAATGTAAAAACTTTTTGCGGCTCTGCTTGCAGA
                               tgctaat  putative branch site (score: 2)
                                        ttacttctctctc  putative PPT
                                  taatagtta  TA-rich tract